Find start end points: [18,35319][385,56980] Score 214894
Recovering alignment: Alignment recovered] Explicit read offe 55%%
genewise output
Score 620.05 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
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Information
Name gi|397463253|gb|JH732248.1|:subseq(0,80000) is longer than
allowed name block (15). Truncating
SPP00000074_2.0 19 KYSAVDTNPLSLYVMHPFWNTIVK VF
+YSAVD+NPLSLYVMHPFWNT+VK +F
QYSAVDSNPLSLYVMHPFWNTVVK IF
gi|397463253|g-44683 ctagggaacctctgaccttaaggaGTGAGGA Intron 1 TAGat
aagctagactctattactgactta<0-----[44611:44281]-0>tt
gctcgcccgccgccgtgcgcgggg tc
SPP00000074_2.0 45 PTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS
PTWLAPNLITF GFLL+VFNF LMAYFDPDFYAS
PTWLAPNLITFCGFLLLVFNFFLMAYFDPDFYAS
gi|397463253|g-44274 catcgcacaattgtcccgtattcagttgcgttgt
ccgtccattctggttttttattttcatacatacc
ctggcatgacttcctgtccccccgactccttttt
SPP00000074_2.0 79 PGHKHVPDWVWIVVGILNFVAYT
P H HVP+ +WI+VG+LNF+AYT
A:A[gca] PDHVHVPNRIWIMVGLLNFMAYT
gi|397463253|g-44172 GGTAAGAT Intron 2 CAGCAcgcgcgcacataaggccatagta
<1-----[44171:36465]-1> caatatcagtgtttgttattcac
tttgctataagcggtccccgatg
SPP00000074_2.0 103 L GVDGKQARRTNSSTPLGELFDH
L GVDGKQARRTNSSTPLGELFDH
L D:D[gat] GVDGKQARRTNSSTPLGELFDH
gi|397463253|g-36393 cGGTAAGAC Intron 3 CAGATggggacgccaataaccggctgc
t <1-----[36389:35798]-1> gtagaacggcacgcctgattaa
a tctggatcacccccagtgctcc
SPP00000074_2.0 127 GLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKY
GLDSW+C+YFVVTVYS FGRGSTGVSVFVLYLLLWVVLFSFILSHWEKY
GLDSWACMYFVVTVYSTFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKY
gi|397463253|g-35729 gcgatgtattggagttatgcgtaggagtgctccttggttttactctgat
gtaggcgtatttctacctgggccgtgttttatttgttttctttcagaaa
cgccgccgcccgttcccccgactacccctctctaggtatacccccgggt
SPP00000074_2.0 176 NTGILFLPWGYDISQV TISFVYIVTA
NTGILFLPWGYDISQ+ TIS+VYIVTA
NTGILFLPWGYDISQM TISIVYIVTA
gi|397463253|g-35582 aagactcctgtgaacaGTAAGTA Intron 4 CAGaatagtagag
acgttttcggaatgat<0-----[35534:33589]-0>ctcttattcc
cagtccgcgatcccgg ctctccagag
SPP00000074_2.0 202 VVGVEAWYEPFLFNFLYRDLFTAMII
+VGVEAW+ PFLFNFLYRDLFT MI+
IVGVEAWHAPFLFNFLYRDLFTTMIL G:G[ggt]
gi|397463253|g-33558 agggggtcgctctatttagctaaaacGGTAAGAA Intron 5
ttgtacgacctttattagattccttt <1-----[33479:30289]
tgatgcgcgtcgttcatacactagtt
SPP00000074_2.0 228 CALCVTLPMSLLNFF SYK
CAL VTLPMS+ NF+ +YK
CALTVTLPMSVYNFY R:K[aag] AYK
gi|397463253|g-30291 CAGGTtgcagaccaagtattAAGTAAGTT Intron 6 AAGGgta
-1> gctctctctgtaata <2-----[30239:28332]-2> caa
tacagtgagcgcctc cta
SPP00000074_2.0 248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV
+NTLK +S+YE M+P +SP LLF L T WI SPSDILE+HPR+FYFMV
SNTLKHHSLYEIMLPFLSPVLLFALCTTWIFVSPSDILEVHPRLFYFMV
gi|397463253|g-28321 aaacacctctgaacctctcgtctgctaatatgtctgacggcccctttag
gactaaactaatttcttccttttctgccgtttcccattatacgttattt
tccggccactaaggatcaggagttgctcgtcggagccggcctgccccgt
SPP00000074_2.0 297 GTAFANST CQLIVCQMSSTRCPTLNW
GTAFAN + CQLIVCQMS+TRC LNW
GTAFANIS CQLIVCQMSNTRCQPLNW
gi|397463253|g-28174 gagtgaatGTAAGAG Intron 7 CAGtccagtcaaaactcccat
gcctcatc<0-----[28150:27527]-0>gatttgatgacggactag
aacttcta cggtgtggcccacgtgcg
SPP00000074_2.0 323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV
+L+PL +VV VV G+A E+ILLYTLT +T+AHIHYGV V
MLLPLAVVVFVVLYGLAPNNETILLYTLTAVITVAHIHYGVCV
gi|397463253|g-27472 accccggggtggctgtgcaagaacctataggaaggcactggtg
tttctctttttttagtccaaactttactccttctcataagtgt
gggaaggttcggctaaaattaatcgcaaaacccggctccagtg
SPP00000074_2.0 366 VKQLSSHFQIYPFSLRKPNSD
V QLS HF I PFSL+K ++D
VNQLSKHFNIRPFSLKKRSTD
gi|397463253|g-27343 GTAAGTG Intron 8 CAGgaccaactaaccttcaacaag
<0-----[27343:23083]-0>taatgaatatgctctaaggca
gcgacgtctcaccaaggctat
//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|397463253|gb|JH732248.1|:subseq(0,80000).pep
QYSAVDSNPLSLYVMHPFWNTVVKIFPTWLAPNLITFCGFLLLVFNFFLMAYFDPDFYAS
APDHVHVPNRIWIMVGLLNFMAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWACMYFVV
TVYSTFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQMTISIVYI
VTAIVGVEAWHAPFLFNFLYRDLFTTMILGCALTVTLPMSVYNFYKAYKSNTLKHHSLYE
IMLPFLSPVLLFALCTTWIFVSPSDILEVHPRLFYFMVGTAFANISCQLIVCQMSNTRCQ
PLNWMLLPLAVVVFVVLYGLAPNNETILLYTLTAVITVAHIHYGVCVVNQLSKHFNIRPF
SLKKRSTD
//
>gi|397463253|gb|JH732248.1|:subseq(0,80000).[44683:23018].sp
CAGTACAGTGCCGTGGACAGCAACCCGCTCTCCCTGTACGTCATGCATCCGTTCTGGAAC
ACGGTGGTGAAGATTTTCCCCACTTGGCTGGCCCCAAATCTGATAACCTTTTGTGGCTTC
CTTCTGCTTGTCTTCAACTTCTTCCTCATGGCATACTTTGACCCCGATTTTTATGCTTCT
GCACCTGATCATGTGCACGTTCCAAATCGAATATGGATCATGGTGGGTCTCCTCAACTTC
ATGGCATATACGCTAGATGGTGTCGATGGGAAGCAAGCTCGCCGAACCAACTCCAGCACC
CCACTGGGTGAGCTCTTTGACCACGGCCTGGACAGCTGGGCCTGCATGTACTTCGTCGTG
ACTGTTTACTCCACCTTCGGCCGGGGATCCACTGGAGTCAGCGTCTTCGTTCTCTATCTC
CTTTTATGGGTGGTTTTATTTTCATTCATCCTCTCCCACTGGGAGAAGTATAACACAGGG
ATTCTCTTCCTGCCCTGGGGATATGACATCAGCCAGATGACCATTTCCATTGTCTACATA
GTGACAGCGATTGTGGGAGTTGAGGCCTGGCACGCGCCTTTCCTGTTTAATTTCTTATAT
AGAGACCTATTCACTACAATGATTCTTGGTTGTGCACTCACAGTGACTCTGCCAATGAGC
GTGTACAACTTTTACAAGGCCTATAAAAGTAACACCCTGAAGCACCACTCACTCTATGAA
ATAATGCTGCCATTTCTCTCACCGGTGTTACTGTTTGCTCTGTGCACTACCTGGATTTTC
GTGTCGCCATCGGACATCCTGGAGGTCCACCCTCGGCTCTTCTACTTCATGGTTGGAACA
GCCTTTGCTAACATTTCATGCCAGCTGATTGTGTGTCAGATGAGCAACACCCGATGCCAG
CCTCTGAACTGGATGCTGCTGCCACTAGCGGTGGTTGTTTTCGTGGTGCTCTATGGATTA
GCACCAAATAATGAAACAATTCTCCTGTACACATTAACAGCAGTCATCACCGTGGCGCAC
ATTCACTACGGAGTGTGTGTGGTGAACCAGCTAAGCAAGCATTTCAATATCCGACCCTTC
TCACTAAAGAAGCGCAGTACAGAT
//
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise match 44683 23020 620.05 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 44683 44612 0.00 - 0 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 44611 44281 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 44280 44172 0.00 - 0 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 44171 36465 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 36464 36390 0.00 - 2 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 36389 35798 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 35797 35535 0.00 - 2 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 35534 33589 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 33588 33480 0.00 - 0 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 33479 30289 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 30288 30240 0.00 - 2 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 30239 28332 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 28331 28151 0.00 - 1 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 28150 27527 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 27526 27344 0.00 - 0 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise intron 27343 23083 0.00 - . gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
gi|397463253|gb|JH732248.1|:subseq(0,80000) GeneWise cds 23082 23020 0.00 - 0 gi|397463253|gb|JH732248.1|:subseq(0,80000)-genewise-prediction-1
//