Find start end points: [44,47294][121,47842] Score 39013
Recovering alignment: Alignment recovered] Explicit read offe 77%

genewise output
Score 112.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|397463590|gb|JH731911.1|:subseq(180000,100000) is longer than
allowed name block (15). Truncating

SPP00000071_2.0   45 RVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGS     
                     RVYGRNA+ALS+ALR     L V++NP KPRR SFEV+L++ DGS     
                     RVYGRNASALSEALRHAVDNLAVEINPEKPRRNSFEVSLVKEDGS     
gi|397463590|gb47293 cgtgcagagcaggcccgggacgggaacgaccaaatggtcgaggga     
                     gtaggacgctgactgactaatctatacaacggagtatcttaaagg     
                     agtgctcttgcgggctttccgagacctgaatgtccggcggggtac     


SPP00000071_2.0   90                           AELWTGIKKGPPRKLKFPEPQEV 
                                                ELW+GIKKGPPRKLKFPEP++V 
                               S:M[atg]        VELWSGIKKGPPRKLKFPEPEKV 
gi|397463590|gb47428 AGTAAGTG  Intron 1   TAGTGggttagaaagcccacatcgcgag 
                      <1-----[47429:47745]-1>  tatgggtaagccgatatcacaat 
                                               ggagtctggggtcgcattggggg 


SPP00000071_2.0  114 VEELKKYLS                                         
                     VE LK  L+                                         
                     VEALKSSLA                                         
gi|397463590|gb47817 gggcaaatg                                         
                     tactaggtc                                         
                     taaggccga                                         


//
Making a M in phase 1 intron
>gi|397463590|gb|JH731911.1|:subseq(180000,100000).pep
RVYGRNASALSEALRHAVDNLAVEINPEKPRRNSFEVSLVKEDGSMVELWSGIKKGPPRK
LKFPEPEKVVEALKSSLA
//
>gi|397463590|gb|JH731911.1|:subseq(180000,100000).[47293:47843].sp
CGAGTGTATGGGCGCAATGCCAGTGCTCTGAGCGAGGCGCTGCGCCATGCTGTTGACAAC
CTGGCAGTGGAAATCAACCCTGAGAAACCACGTAGGAATAGCTTCGAGGTGTCCCTGGTG
AAGGAGGATGGAAGCATGGTGGAGTTATGGAGTGGCATTAAGAAGGGGCCGCCTCGCAAG
CTCAAATTTCCTGAGCCGGAGAAGGTGGTTGAAGCACTGAAGAGCAGCTTGGCA
//
gi|397463590|gb|JH731911.1|:subseq(180000,100000)	GeneWise	match	47293	47843	112.57	+	.	gi|397463590|gb|JH731911.1|:subseq(180000,100000)-genewise-prediction-1
gi|397463590|gb|JH731911.1|:subseq(180000,100000)	GeneWise	cds	47293	47428	0.00	+	0	gi|397463590|gb|JH731911.1|:subseq(180000,100000)-genewise-prediction-1
gi|397463590|gb|JH731911.1|:subseq(180000,100000)	GeneWise	intron	47429	47745	0.00	+	.	gi|397463590|gb|JH731911.1|:subseq(180000,100000)-genewise-prediction-1
gi|397463590|gb|JH731911.1|:subseq(180000,100000)	GeneWise	cds	47746	47843	0.00	+	2	gi|397463590|gb|JH731911.1|:subseq(180000,100000)-genewise-prediction-1