TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000067_2.0 # Protein # 15 kDa selenoprotein (Sel15) #
Human (Homo sapiens)
         (162 letters)

Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa 
           14,644 sequences; 2,174,243,242 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|397456477|gb|JH739023.1| Alligator mississippiensis unplaced ...    87   2e-16

>gi|397456477|gb|JH739023.1| Alligator mississippiensis unplaced genomic
              scaffold scaffold-13193, whole genome shotgun sequence
          Length = 2201043

 Score = 87.4 bits (215), Expect = 2e-16
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +3

Query: 111    KLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 162
              K+     ++YVRGSDPVLKLLDD GNIAEELSILKWNTDSVEEFLSEKLERI
Sbjct: 665694 KVIPFFSLQYVRGSDPVLKLLDDTGNIAEELSILKWNTDSVEEFLSEKLERI 665849



 Score = 71.2 bits (173), Expect = 1e-11
 Identities = 34/60 (56%), Positives = 40/60 (66%)
 Frame = +3

Query: 26     VSAFGAEFSSEACRELGFXXXXXXXXXXXXGQFNLLQLDPDCRGCCQEEAQFETKKLYAG 85
              +S +G + SSEACRELGF            GQF+L QLDP CR CCQEEAQFET+K+  G
Sbjct: 615420 LSVYGTKLSSEACRELGFSSNLLCSSCSLLGQFSLNQLDPFCRQCCQEEAQFETRKVCFG 615599



 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 76     QFETKKLYAGAILEVCGXKLGRFPQVQ 102
              QF T +LYAGA+LEVCG KLGRFPQVQ
Sbjct: 643025 QFFTLQLYAGAVLEVCG*KLGRFPQVQ 643105



 Score = 43.1 bits (100), Expect = 0.004
 Identities = 25/48 (52%), Positives = 28/48 (58%)
 Frame = +3

Query: 98     FPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILK 145
              FP   AFVRSDKPKLFRGLQIK      P +     N +  EE S+ K
Sbjct: 663183 FPLTLAFVRSDKPKLFRGLQIKVSNDFSPFIL----NSSY*EEFSVHK 663314


  Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
  /genome.fa
    Posted date:  Oct 18, 2013  5:53 PM
  Number of letters in database: 2,174,243,242
  Number of sequences in database:  14,644
  
Lambda     K      H
   0.322    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,450,190
Number of Sequences: 14644
Number of extensions: 4530048
Number of successful extensions: 14758
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 14275
Number of HSP's gapped (non-prelim): 1102
length of query: 162
length of database: 724,747,747
effective HSP length: 119
effective length of query: 43
effective length of database: 723,005,111
effective search space: 31089219773
effective search space used: 31089219773
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)