Find start end points: [25,15421][161,65848] Score 77157
Recovering alignment: Alignment recovered] Explicit read offe 77%

genewise output
Score 222.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397456477|gb|JH739023.1|:subseq(600000,100000) is longer than
allowed name block (15). Truncating

SPP00000067_2.0   26 VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 
                     +S +G ++SSEACRELGFSSNLLCSSC LLGQF+L QLDP CR CCQEE 
                     LSVYGTKLSSEACRELGFSSNLLCSSCSLLGQFSLNQLDPFCRQCCQEE 
gi|397456477|gb15420 ctgtgaatttggtagcgttaatctattaccgctacaccgcttacttcgg 
                     tctagcatccacggatgtcgattggcggttgatgtaatactggaggaaa 
                     atttgaagacaacaaaatcccgatttccttagtcgtagtaccagtcaga 


SPP00000067_2.0   75 AQFETKK                       LYAGAILEVCGXKLGRFPQ 
                     AQFET+K                       LYAGA+LEVCGXKLGRFPQ 
                     AQFETRK                       LYAGAVLEVCGXKLGRFPQ 
gi|397456477|gb15567 gctgaaaGTATGTT  Intron 1   CAGctggggcggtgtatgatcc 
                     catacga<0-----[15588:43042]-0>tacgcttatgggatggtca 
                     tgtatag                       atagttcagtaaagagcta 


SPP00000067_2.0  101 VQ                          FVRSDKPKLFRGLQIK      
                     VQ                          FVRSDKPKLFRGLQIK      
                     VQ          A:A[gct]        FVRSDKPKLFRGLQIK      
gi|397456477|gb43100 gcGGTAAGTA  Intron 2   TAGCTtgaagacactagccaa      
                     ta <1-----[43107:63198]-1>  ttggaacattggtata      
                     cg                          tcgtcgcagcgagacg      


SPP00000067_2.0  120                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDD GNIAEELSILK 
                                            YVRGSDPVLKLLDDTGNIAEELSILK 
gi|397456477|gb63249 GTGAGTA  Intron 3   CAGtgcgtgcgcaccggagaagggcaaca 
                     <0-----[63249:65720]-0>atggcacttattaacgatcaatgtta 
                                            tgtttctaagggtctgcttaagcccg 


SPP00000067_2.0  146 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
gi|397456477|gb65799 taagagggtcagacgca                                 
                     gacagtaattgaatagt                                 
                     gcattaaacgtaaaata                                 


//
Making a A in phase 1 intron
>gi|397456477|gb|JH739023.1|:subseq(600000,100000).pep
LSVYGTKLSSEACRELGFSSNLLCSSCSLLGQFSLNQLDPFCRQCCQEEAQFETRKLYAG
AVLEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKVRGSDPVLKLLDDTGNIAEELSILK
WNTDSVEEFLSEKLERI
//
>gi|397456477|gb|JH739023.1|:subseq(600000,100000).[15420:65849].sp
CTATCTGTTTATGGGACAAAATTGTCATCCGAAGCATGCAGAGAACTAGGATTTTCCAGC
AACTTGCTATGTAGTTCTTGCAGCCTTCTTGGACAGTTTAGCCTGAATCAACTGGATCCA
TTCTGCAGACAGTGTTGCCAAGAGGAAGCTCAGTTTGAAACTAGAAAGCTATATGCAGGG
GCTGTTCTCGAAGTGTGTGGATGAAAATTGGGAAGGTTCCCTCAAGTCCAGGCTTTTGTC
AGGAGTGACAAGCCCAAACTGTTCAGGGGACTGCAAATCAAGTATGTGCGTGGTTCTGAC
CCTGTACTAAAGCTGCTGGATGACACTGGGAACATTGCTGAAGAACTGAGCATCCTCAAG
TGGAACACAGATAGTGTAGAAGAATTCCTGAGTGAAAAACTAGAACGTATA
//
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	match	15420	65849	222.63	+	.	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	cds	15420	15587	0.00	+	0	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	intron	15588	43042	0.00	+	.	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	cds	43043	43106	0.00	+	0	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	intron	43107	63198	0.00	+	.	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	cds	63199	63248	0.00	+	2	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	intron	63249	65720	0.00	+	.	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
gi|397456477|gb|JH739023.1|:subseq(600000,100000)	GeneWise	cds	65721	65849	0.00	+	0	gi|397456477|gb|JH739023.1|:subseq(600000,100000)-genewise-prediction-1
//