Find start end points: [34,50001][445,53567] Score 213331
Recovering alignment: Alignment recovered] Explicit read offe 60%
genewise output
Score 615.54 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
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Information
Name gi|397458164|gb|JH737337.1|:subseq(347813,73300) is longer than
allowed name block (15). Truncating
SPP00000064_2.0 35 YRPFEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRP
YRPFEP+ALGLSP WRLTGF ++GXGCKVPQE LL+LLAGL
YRPFEPEALGLSPGWRLTGFGELRGXGCKVPQETLLRLLAGLGGARA--
gi|397458164|gb50000 tcctgcggcgcacgtccagtggccgtgtagccgaccaccggcgggcg
agctacactgtgcgggtcgtgatgggggatcaacttgttcgtggcgc
cgccgtgtaggcgagcccccgggccaccacgggggcgcggaccaccg
SPP00000064_2.0 84 PLGRGLVGGQEEASQEAGL AGAG
G G V E S L +G G
-AGEGPV--SEPGSSPPAL P:A[gcc] SGGG
gi|397458164|gb50141 ggggcg tgcgttccgcGGTGAGCG Intron 1 CAGCCtggg
cgagct cacgccccct <1-----[50190:50297]-1> cggg
cggtcg cgcccccccc ctcc
SPP00000064_2.0 108 PSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM
+ +GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM
C--FLSPVGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM
gi|397458164|gb50312 t tttcggagagttgaccccggctcgcaagtttccgggctaa
g ttcctgtgtacgttctgaggtcttaccattacttaacatt
t cgctaacggcgcctcggcgcctgggcgtccctcggttcgg
SPP00000064_2.0 151 GRIACANVLSDLYAMGITECDNMLML
GRIACANVLSDLYAMGITECDNMLML
GRIACANVLSDLYAMGITECDNMLML
gi|397458164|gb50435 GTGGGTC Intron 2 TAGgcagtgagtagctgagaagtgaacac
<0-----[50435:50636]-0>ggtcgcattgatactgtcagaatttt
tccttccggctcccgccagcccgggg
SPP00000064_2.0 177 LSVSQSMSEE EREKVTPLMVKGFRDA
LSVSQ M++E EREK+ PL++KGFRDA
LSVSQKMTDE EREKIMPLIIKGFRDA
gi|397458164|gb50715 cagacaaaggGTGAGGC Intron 3 TAGgcgaaaccaaagtcgg
tgtgaatcaa<0-----[50745:51773]-0>agaattctttagtgac
ctccgggttg atggcgagccatcgtt
SPP00000064_2.0 203 AEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFI
AE+GGT+VTGGQTV+NPWII+GGVATVVCQPNEFI
AEDGGTSVTGGQTVMNPWIIVGGVATVVCQPNEFI
gi|397458164|gb51822 gggggatgaggcagaactaagggggaggtccagta
caaggcctcggacttacgtttggtccttgacaatt
tgtccaggattgtggccgcttgttctgccgctgcc
SPP00000064_2.0 238 PDSAVVGDVLVLTKPLGTQVAVN
PD+AV GDVLVLTKPLGTQVAV
M:M[atg] PDNAVPGDVLVLTKPLGTQVAVT
gi|397458164|gb51927 ATGTGAGTT Intron 4 CAGGcgaggcgggcgcaaccgacggga
<2-----[51929:52125]-2> caactcgattttcactgcatctc
actattctggtcggcgcaggtcc
SPP00000064_2.0 262 AHQWLDN PERWNKVKMVVSREEVELA
AHQWLDN PERWNK+K+VVS+E+VELA
AHQWLDN PERWNKIKLVVSKEDVELA
gi|397458164|gb52196 gcctcgaGTATGTA Intron 5 CAGcgctaaaacggtaggggcg
caagtaa<0-----[52217:52296]-0>caggaatatttcaaatatc
tcgggtt tgggcgcgggccggtggac
SPP00000064_2.0 288 YQEAMFNMATLNRT AGLMHTFNA
YQEAMF+MA LNRT A LMHTFNA
YQEAMFSMAMLNRT A:A[gcg] ASLMHTFNA
gi|397458164|gb52354 tcggataagacacaGGTCGGTG Intron 6 CAGCGgacacatag
aaacttgtcttagc <1-----[52397:52675]-1> cgttactac
cgacgccgcggcaa ccggctcct
SPP00000064_2.0 312 HAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASG-R
HAATDITGFGILGH+QNLA+QQR+EVSFVIHNLPIIAKMAAVSKA G R
HAATDITGFGILGHAQNLARQQRHEVSFVIHNLPIIAKMAAVSKACGNR
gi|397458164|gb52705 cggagaagtgacgcgcacgaccccggttgacaccaagaagggaagtgac
acccatcgtgttgacaatcgaagaatctttaatcttcatcctgacggag
cacgccgccgcgctggcacgggctatttccctgcctcggtaccgccgcc
SPP00000064_2.0 360 FGLLQGTSAETS GLLICLPREQA
GLLQGTS ETS GLLICLPREQA
SGLLQGTSPETS G:G[ggg] GLLICLPREQA
gi|397458164|gb52852 tgcccgatcgatGGTAGGGC Intron 7 TAGGGgccatcccgcg
cgttagcccacc <1-----[52889:53347]-1> gtttgtcgaac
cggtgcgtggca gtgccacgggc
SPP00000064_2.0 384 ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATA
ARFC+EIKS K+GEGHQAWI+GIVEKGN+TARIIDKPR+IEV+PRGA A
ARFCAEIKSPKHGEGHQAWIIGIVEKGNQTARIIDKPRIIEVMPRGA-A
gi|397458164|gb53383 gcttggaatcacgggccgtaagaggagacagcaagaccaaggaccgg g
cgtgcataccaagagaacgttgttaagaaccgttaacgttattcggc c
accttgcgccgttgccgcgccccgagccgtacctcgccccgggtggt a
SPP00000064_2.0 433 AVLAPDSSNASSEP
A +P + A + P
ATASPTDNTAGASP
gi|397458164|gb53527 gagtcagaagggac
ccccccaaccgcgc
ctcaccccatgcct
//
Making a A in phase 1 intron
Making a M in phase 2 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
>gi|397458164|gb|JH737337.1|:subseq(347813,73300).pep
YRPFEPEALGLSPGWRLTGFGELRGXGCKVPQETLLRLLAGLGGARAAGEGPVSEPGSSP
PALASGGGCFLSPVGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSD
LYAMGITECDNMLMLLSVSQKMTDEEREKIMPLIIKGFRDAAEDGGTSVTGGQTVMNPWI
IVGGVATVVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVTAHQWLDNPERWNKIKLVVSK
EDVELAYQEAMFSMAMLNRTAASLMHTFNAHAATDITGFGILGHAQNLARQQRHEVSFVI
HNLPIIAKMAAVSKACGNRSGLLQGTSPETSGGLLICLPREQAARFCAEIKSPKHGEGHQ
AWIIGIVEKGNQTARIIDKPRIIEVMPRGAAATASPTDNTAGASP
//
>gi|397458164|gb|JH737337.1|:subseq(347813,73300).[50000:53568].sp
TACCGGCCCTTCGAGCCTGAGGCTCTAGGGCTGAGCCCGGGATGGCGCCTCACCGGCTTC
GGGGAGCTGCGCGGCTGAGGCTGCAAAGTCCCGCAGGAGACGCTGCTCAGGCTCCTGGCG
GGACTCGGCGGAGCCCGCGCGGCCGGGGAGGGTCCCGTGTCCGAGCCCGGCTCCTCCCCC
CCCGCCCTCGCCTCCGGTGGCGGCTGTTTCTTGTCCCCTGTAGGAATCGGGATGGACTCG
TGCGTCATTCCCCTGCGGCACGGGGGCCTCTCTCTGGTGCAGACCACGGATTTCTTCTAC
CCTCTCGTGGAGGATCCTTACATGATGGGTCGCATCGCTTGTGCCAACGTGTTGAGCGAT
CTCTACGCCATGGGCATCACAGAGTGCGACAACATGCTGATGCTGCTCAGTGTCAGCCAG
AAGATGACTGATGAGGAACGTGAGAAGATCATGCCACTGATCATCAAAGGTTTCCGGGAT
GCTGCTGAGGATGGCGGCACATCGGTGACAGGTGGTCAGACTGTGATGAACCCCTGGATC
ATTGTTGGGGGTGTTGCCACTGTGGTCTGCCAGCCCAATGAGTTCATCATGCCAGACAAT
GCAGTTCCTGGCGATGTGCTGGTTCTCACGAAGCCCCTGGGCACACAGGTGGCTGTCACC
GCTCACCAGTGGCTGGATAATCCTGAGCGGTGGAACAAGATCAAGCTGGTGGTCTCCAAG
GAGGATGTGGAGCTAGCCTACCAGGAAGCCATGTTCAGCATGGCCATGCTGAACCGAACA
GCGGCCAGCCTGATGCACACTTTCAACGCTCACGCAGCCACGGACATCACGGGCTTCGGG
ATCCTGGGCCATGCGCAGAACCTAGCCAGGCAGCAGCGCCATGAAGTTTCTTTTGTCATC
CACAATCTGCCCATCATTGCCAAGATGGCTGCAGTCAGCAAGGCCTGCGGGAACCGCTCC
GGGCTGCTTCAGGGCACGTCTCCGGAGACCTCAGGGGGGCTTCTGATCTGCCTACCCCGG
GAGCAGGCCGCACGCTTCTGTGCTGAGATCAAGTCCCCCAAGCATGGTGAGGGCCACCAG
GCCTGGATCATCGGCATCGTGGAAAAGGGCAACCAGACTGCACGCATCATTGACAAGCCC
CGCATCATCGAGGTGATGCCTCGGGGGGCTGCAGCCACTGCCTCACCCACCGACAACACA
GCTGGGGCCAGCCCT
//
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise match 50000 53568 619.54 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 50000 50189 0.00 + 0 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 50190 50297 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 50298 50434 0.00 + 2 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 50435 50636 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 50637 50744 0.00 + 0 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 50745 51773 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 51774 51928 0.00 + 0 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 51929 52125 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 52126 52216 0.00 + 1 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 52217 52296 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 52297 52396 0.00 + 0 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 52397 52675 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 52676 52888 0.00 + 2 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise intron 52889 53347 0.00 + . gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1
gi|397458164|gb|JH737337.1|:subseq(347813,73300) GeneWise cds 53348 53568 0.00 + 2 gi|397458164|gb|JH737337.1|:subseq(347813,73300)-genewise-prediction-1