Find start end points: [175,83145][214,83256] Score 6533
Recovering alignment: Alignment recovered69] Explicit read off3%
genewise output
Score 18.85 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397458686|gb|JH736815.1|:subseq(0,98669) is longer than
allowed name block (15). Truncating
SPP00000060_2.0 176 ATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWL
A+ C+P F++ + D L L K + T V+QWL
ASGACKPLHFLLCSEMLSCDYLPLLKEVAT--TNVVNQWL
gi|397458686|gb83144 gtggtaccctccttgacttgtccccaggga aaggactc
ccgcgactatttgcattcgaatcttaatcc cattaagt
taaccgttttttcaagctttctacaaactc gtagcggt
//
>gi|397458686|gb|JH736815.1|:subseq(0,98669).pep
ASGACKPLHFLLCSEMLSCDYLPLLKEVATTNVVNQWL
//
>gi|397458686|gb|JH736815.1|:subseq(0,98669).[83144:83257].sp
GCTTCAGGAGCCTGCAAGCCTCTTCATTTTCTTCTTTGCTCAGAAATGCTCTCTTGTGAT
TACCTTCCACTCCTAAAAGAAGTCGCTACCACGAATGTAGTGAACCAGTGGCTT
//
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise match 83144 83257 19.85 + . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 83144 83257 0.00 + 0 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
//
Find start end points: [0,49822][320,77468] Score 240006
Recovering alignment: Alignment recoveredExplicit read offffe 63%
genewise output
Score 692.51 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
Information
Name gi|397458686|gb|JH736815.1|:subseq(0,98669) is longer than
allowed name block (15). Truncating
SPP00000060_2.0 1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH
MS RESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH
MSVRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH
gi|397458686|g-48849 atgcgttacgatgcgaatccactagcagagtagccggtcaccgttcgac
tctgactacagaataagtgtcgtcatagcggatcaattaattactaaaa
gttggctcagctagcgcccgcactagacaccagtgttagaatacaaact
SPP00000060_2.0 50 FQEDEQFLGAVMPRL IGMDTCVI
FQEDEQFLGAVMPRL IGMDTCVI
FQEDEQFLGAVMPRL G:G[gga] IGMDTCVI
gi|397458686|g-48702 tcgggctcgggacctGGTGAGTA Intron 1 CAGGAagagatga
taaaaattgcttcgt <1-----[48656:46149]-1> tgtacgtt
caatagttattgcgg tggcactt
SPP00000060_2.0 74 PLRHGGLSLVQTTDYIYPIVDDPYMM
PLRHGGLSLVQTTDYIYPIVDDPYMM
PLRHGGLSLVQTTDYIYPIVDDPYMM
gi|397458686|g-46122 ctacggcttgcaagtatcagggctaaGTAAGTT Intron 2 CAG
ctgaggtcttaccaatacttaacatt<0-----[46044:37589]-0>
taatatgtgcgaatcttatgtcacgg
SPP00000060_2.0 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR
GR+ACANVLSDLYAMGVTECDNMLMLLG+SNKMTDR
GRxACANVLSDLYAMGVTECDNMLMLLGISNKMTDR
gi|397458686|g-37588 gcNgtgagcagctgaggagtgaataccgaaaaaaga
ggtcgcattgatactgtcagaatttttgtgaatcag
atactctcatcttcggcagcccgggctacttaggcg
SPP00000060_2.0 136 ERDKVMPLIIQGFKDAAEEAGTSVTG
ERDKVMPLIIQGFKDAAEEAGTSVTG
ERDKVMPLIIQGFKDAAEEAGTSVTG
gi|397458686|g-37480 GTAAGAT Intron 3 TAGgagagaccaacgtagggggggatgag
<0-----[37480:36546]-0>agaattctttagtaaccaacgcctcg
agcaggtatcgccataaagagttggt
SPP00000060_2.0 162 GQTVLNPWIVLGGVATTVCQPNEFI
GQTVLNPWIVLGGVATTVCQPNEFI
GQTVLNPWIVLGGVATTVCQPNEFI M:M[atg]
gi|397458686|g-36467 gcagtactagcggggaagtccagtaATGTAAGTT Intron 4
gacttacgtttggtccctgacaatt <2-----[36390:35574]
caggattgtttaagcaactgttaca
SPP00000060_2.0 187 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI
PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI
PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI
gi|397458686|g-35576 CAGGcgaggcgggcgtaactgacgggggcctcga
-2> caactcgattttcactgcatctctaagtat
actagaatataatacgaaagtatccggatt
SPP00000060_2.0 218 PEKWNKIKLVVTQEDVELAYQEAMMN
PEKWNKIKLVVTQEDVELAYQEAMMN
PEKWNKIKLVVTQEDVELAYQEAMMN
gi|397458686|g-35482 GTGAGTA Intron 5 TAGcgataaaacggacggggcgtcggaaa
<0-----[35482:31660]-0>caagaatatttcaaatatcaaactta
aaagtacaggagaatagaacggaggt
SPP00000060_2.0 244 MARLNRT GLLICLPREQAARFCA
MARLNRT GLLICLPREQAARFCA
MARLNRT G:G[gga] GLLICLPREQAARFCA
gi|397458686|g-31581 agacaaaGGTGAGAA Intron 6 CAGGAgccattccgcggcttg
tcgtagc <1-----[31559:21413]-1> gtttgtcgaaccgtgc
gagccaa cccctgatagtatctt
SPP00000060_2.0 268 EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT
EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT
EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT
gi|397458686|g-21362 gaatcatgggccgtaagaggagacagaaagaccaagggccggacagaca
ataccaagagaacgttgttaagagccgttaacgttatccatccaatacc
gcatcgccgtcaagctgcagggcctcatataaactatagagctacgcaa
SPP00000060_2.0 317 PGATS
PGATS
PGATS
gi|397458686|g-21215 cggat
cgccc
ttctt
//
Making a G in phase 1 intron
Making a M in phase 2 intron
Making a G in phase 1 intron
>gi|397458686|gb|JH736815.1|:subseq(0,98669).pep
MSVRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRxACANVLSDLYAMGVTECD
NMLMLLGISNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC
QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
MMNMARLNRTGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPR
IIEVAPQVATQNVNPTPGATS
//
>gi|397458686|gb|JH736815.1|:subseq(0,98669).[48849:21199].sp
ATGTCTGTTCGGGAGTCCTTTAACCCAGAGAGCTATGAACTGGACAAGAGCTTCCGCCTG
ACCCGATTCACTGAACTGAAAGGCACAGGCTGCAAAGTGCCTCAGGATGTTTTACAGAAA
CTACTTGAATCCTTACAAGAAAACCATTTCCAAGAAGATGAACAGTTTCTTGGAGCTGTT
ATGCCCCGGTTGGGAATTGGGATGGACACATGCGTTATTCCTTTAAGACATGGAGGTCTG
TCTTTGGTCCAGACAACAGATTACATTTATCCAATTGTGGATGACCCATACATGATGGGA
CGTNTAGCCTGTGCCAATGTCCTAAGTGACCTTTATGCCATGGGGGTCACAGAGTGCGAC
AACATGTTGATGCTCCTTGGAATCAGTAATAAAATGACGGACAGGGAAAGGGACAAAGTG
ATGCCTCTAATTATCCAGGGCTTCAAAGATGCAGCAGAAGAGGCAGGGACTTCTGTGACG
GGTGGCCAAACGGTGTTAAATCCTTGGATTGTTCTTGGAGGAGTGGCCACAACAGTCTGT
CAGCCTAATGAATTCATAATGCCAGACAATGCAGTGCCAGGAGATGTACTTGTATTAACT
AAACCCTTGGGAACACAAGTGGCTGTAGCTGTCCACCAGTGGCTAGATATTCCAGAAAAA
TGGAATAAAATCAAACTGGTGGTAACGCAAGAAGATGTAGAGCTAGCATACCAGGAGGCA
ATGATGAATATGGCAAGGCTCAACAGAACAGGAGGCCTCCTCATCTGTTTGCCACGTGAA
CAGGCTGCACGTTTCTGTGCTGAGATCAAATCTCCCAAGTACGGCGAGGGTCACCAAGCA
TGGATCATTGGGATCGTAGAGAAGGGGAACCGCACTGCCAGAATTATAGATAAACCACGA
ATCATTGAAGTTGCACCGCAAGTGGCCACTCAAAACGTGAACCCAACACCTGGTGCCACT
TCT
//
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise match 48849 21201 692.51 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 48849 48657 0.00 - 0 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 48656 46149 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 46148 46045 0.00 - 2 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 46044 37589 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 37588 37481 0.00 - 0 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 37480 36546 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 36545 36391 0.00 - 0 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 36390 35574 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 35573 35483 0.00 - 1 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 35482 31660 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 31659 31560 0.00 - 0 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise intron 31559 21413 0.00 - . gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
gi|397458686|gb|JH736815.1|:subseq(0,98669) GeneWise cds 21412 21201 0.00 - 2 gi|397458686|gb|JH736815.1|:subseq(0,98669)-genewise-prediction-1
//