Find start end points: [0,49562][286,62049] Score 190597
Recovering alignment: Alignment recoveredExplicit read offone 60%
genewise output
Score 549.95 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
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Information
Name gi|397461042|gb|JH734459.1|:subseq(152395,112049) is longer than
allowed name block (15). Truncating
SPP00000146_2.0 1 MAASLWMGD LEPYMDENFISRAFATM
MAASLWMGD LEPYMDENF+SRAFATM
MAASLWMGD LEPYMDENFVSRAFATM
gi|397461042|g-62489 aggactaggGTGAGTG Intron 1 TAGcgctaggatgtagtgaa
tccgtgtga<0-----[62462:62050]-0>tacataaattcgctcct
gccccggac gggcgcgcttgaccccg
SPP00000146_2.0 27 GETVMSVKIIRNRLT IPAGYCFV
GE V+SVKIIRNRLT IPAGYCFV
GELVLSVKIIRNRLT G:G[gga] IPAGYCFV
gi|397461042|g-61998 ggcgcagaaacactaGGGTAAGCG Intron 2 CAGAacggtttg
gatttgtattgagtc <2-----[61951:60866]-2> tccgagtt
agtggcgaccctagg ttgctctg
SPP00000146_2.0 51 EFADLATAEKCLHKINGKPLPGATP A
EFADLATAEKCLHKINGKPLPGATP A
EFADLATAEKCLHKINGKPLPGATP A
gi|397461042|g-60840 gtggcgaggattcaaagacccggacGTAAGTA Intron 3 CAGg
atcatcccaagtaatagactcgccc<0-----[60765:58302]-0>c
atatgttagatacactaaatttcaa a
SPP00000146_2.0 77 KRFKLNYATYGKQPDN PEYSLFV
KRFKLNYATYGKQPDN PEYSLFV
KRFKLNYATYGKQPDN S:S[agt] PEYSLFV
gi|397461042|g-58298 actacatgatgaccgaAGGTAAGTG Intron 4 CAGTcgttctg
agtataaccagaacaa <2-----[58248:57072]-2> caacttt
aatagttaacaaattc gacgttg
SPP00000146_2.0 101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS
GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ+GVS
GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQSGVS
gi|397461042|g-57049 ggtacgggggactgttgagtcttaggaggtgctggt
gatccataagttaatttataccggggatttaacgtc
atgcttgttcgatgtttatcaatattatcgcaaatc
SPP00000146_2.0 137 GYGFVKFTDELEQKRALTECQGA
GYGFVKFTDELEQKRALTECQGA
K:K[aaa] GYGFVKFTDELEQKRALTECQGA
gi|397461042|g-56941 AAGTAAGTT Intron 5 CAGAgtgtgataggcgcaagcagtcgg
<2-----[56939:54965]-2> gagttatcaataaagctcagagc
ctgtgacatagaggacgaacaat
SPP00000146_2.0 161 VGLGSKPVRLSVAIPK SRVKPVE
VGLGSKP+RLSVAIPK +RVK E
VGLGSKPIRLSVAIPK A:A[gcg] NRVKTAE
gi|397461042|g-54894 ggtgtacactaggacaGCGTGAGTG Intron 6 AAGGacgaagg
tgtgcactgtgtctca <2-----[54844:52612]-2> agtacca
gggccatatgcgcaaa ctggacg
SPP00000146_2.0 185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ
Y+QMY+Y+YNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ
YNQMYNYNYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ
gi|397461042|g-52589 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac
aaataaaaaaaaaaaaaaaacaggaaaacggagagacaagacagcta
ctggcctttcatcaatgcctgggatcgcactccccccgtgcggctgg
SPP00000146_2.0 232 TYEEVGDDALE
TYEEVG+DALE
TYEEVGEDALE
gi|397461042|g-52448 GTATGGG Intron 7 TAGatgggggggtg
<0-----[52448:51840]-0>caaatgaacta
ataattgtaga
SPP00000146_2.0 243 PMPQLDVTEANKEFMEQSEELYD
P PQLDV+EANK+F+EQSEELYD
D:D[gat] PAPQLDVSEANKQFVEQSEELYD
gi|397461042|g-51806 GGTAAATA Intron 8 TAGATcgcctggaggaactggcaggctg
<1-----[51805:50134]-1> cccatatgacaaattaagaataa
attgatgtaacggtaagtagttt
SPP00000146_2.0 267 ALMDCHWQPLDTVSSEIPAMM
AL D HWQPLDTVSSEIPA++
ALTDSHWQPLDTVSSEIPAIL
gi|397461042|g-50062 gtagtctcctgagttgacgat
ctcacagactactccatcctt
cgtctcggtgccctagtacca
//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|397461042|gb|JH734459.1|:subseq(152395,112049).pep
MAASLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQSGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPIRLSVAIPKANRV
KTAEYNQMYNYNYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGEDA
LEDPAPQLDVSEANKQFVEQSEELYDALTDSHWQPLDTVSSEIPAIL
//
>gi|397461042|gb|JH734459.1|:subseq(152395,112049).[62489:49998].sp
ATGGCCGCCAGCCTCTGGATGGGAGACCTGGAGCCGTACATGGACGAGAACTTTGTTTCG
AGAGCCTTCGCCACCATGGGAGAGCTTGTGCTGAGCGTGAAAATCATCCGCAATCGATTG
ACGGGAATTCCTGCGGGCTATTGCTTTGTGGAATTTGCAGATCTGGCTACTGCAGAGAAA
TGTTTACACAAAATCAATGGAAAACCACTTCCTGGTGCCACACCAGCAAAACGATTTAAA
CTGAATTATGCAACATACGGAAAACAACCTGATAACAGTCCGGAATACTCGCTTTTTGTG
GGAGATTTGACCCCTGATGTGGATGATGGCATGCTATATGAGTTTTTTGTTAAAGTTTAC
CCATCATGTAGAGGTGGTAAAGTTGTCTTGGACCAATCAGGAGTTTCCAAAGGCTATGGG
TTTGTGAAATTCACAGATGAACTGGAACAGAAGAGAGCCCTGACAGAATGCCAAGGAGCT
GTGGGGTTGGGCTCCAAACCTATACGTTTGAGCGTGGCCATACCAAAAGCGAACCGTGTG
AAGACAGCCGAGTACAATCAGATGTACAACTATAATTATAACCAATATTACCAACAATAT
CAGAACTACTATGCGCAGTGGGGATATGACCAGAACACAGGCAGTTACAGCTACAGCTAC
CCCCAGTATGGGTACACGCAGAGCACTATGCAGACATATGAAGAAGTTGGTGAGGATGCA
TTGGAAGATCCAGCTCCTCAGTTAGATGTGAGTGAAGCAAACAAGCAGTTTGTAGAACAG
AGTGAAGAGCTTTATGATGCCTTGACTGACTCTCACTGGCAGCCTTTGGACACCGTCTCT
TCAGAGATTCCAGCCATCTTA
//
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise match 62489 50000 549.95 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 62489 62463 0.00 - 0 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 62462 62050 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 62049 61952 0.00 - 0 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 61951 60866 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 60865 60766 0.00 - 1 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 60765 58302 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 58301 58249 0.00 - 0 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 58248 57072 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 57071 56940 0.00 - 1 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 56939 54965 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 54964 54845 0.00 - 1 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 54844 52612 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 52611 52449 0.00 - 1 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 52448 51840 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 51839 51806 0.00 - 0 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise intron 51805 50134 0.00 - . gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
gi|397461042|gb|JH734459.1|:subseq(152395,112049) GeneWise cds 50133 50000 0.00 - 2 gi|397461042|gb|JH734459.1|:subseq(152395,112049)-genewise-prediction-1
//