Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/SBP2.fa -t gi|397459409|gb|JH736092.1|subseq.fa -E]
Hostname: [ws101068]
C4 Alignment:
------------
Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human (Homo sapiens)
Target: gi|397459409|gb|JH736092.1|:subseq(0,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-8255, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1368
Query range: 0 -> 844
Target range: 11801 -> 78644
1 : MetAlaSerGluGlyProArgGluProGlu{Se} >>>> Target Intron 1 >>> : 11
:!:|||.!! !||| !|||...|||...{!!} 3803 bp
LeuAlaGlyTrpGlySerArgSerProArg{Ar}++
11802 : CTCGCAGGCTGGGGGAGCAGGTCCCCCCGC{AG}gt........................ : 11836
12 : > {r}Glu >>>> Target Intron 2 >>>> GlyIleLysLeuSerAlaAspV : 20
{!}||| 24512 bp ||||||||||||||||||!!:|
+-{g}Glu++ ++GlyIleLysLeuSerAlaGluV
11837 : .aa{G}GAGgt.........................agGGCATCAAGTTATCAGCAGAGG : 40174
21 : alLysProPheValProArgPheAlaGlyLeuAsnValAlaTrpLeuGluSerSerGluA : 40
|||||||||||||||||!:!!:!||| !:!!!..|||||||||! !||| !!|||||||
alLysProPheValProLysTyrAlaThrValThrValAlaTrpSerGluProSerGluA
40175 : TCAAACCGTTTGTCCCAAAATATGCGACGGTAACAGTGGCATGGTCAGAACCCTCAGAAG : 40234
41 : laCysValPheProSerSerAlaAlaThrTyrTyrProPheValGlnGluProProValT : 60
||||||||!!.|||!!!! ! !.!!|||! !||||||||||||||||||||| !!:!!
laCysValLeuProArgTyrLeuThrThrCysTyrProPheValGlnGluProSerMetA
40235 : CATGTGTCTTGCCTAGGTACTTAACTACATGCTACCCATTTGTTCAGGAACCATCTATGG : 40294
61 : hr{Gl} >>>> Target Intron 3 >>>> {u}GlnLysIleTyrThrGluAspM : 69
!{:!} 5053 bp {!}||| ! :!:! !|||||||||:
sp{Ly}++ ++{s}GlnHisValCysThrGluAspV
40295 : AT{AA}gt.........................ag{G}CAACATGTGTGTACTGAAGACG : 45374
70 : etAlaPheGlyAlaSerThrPheProProGlnTyrLeuSerSerGluIle<-><-><->< : 86
!!:!!!::! !!.!|||:!!! !! ! !!||| ! !||| !...:!!
alSerTrpAspGlySerSerSerLeuSerGlnSerThrSerHisSerValMetArgSerA
45375 : TGTCCTGGGATGGCTCTTCATCTCTCTCTCAAAGTACATCTCATAGTGTTATGAGAAGTG : 45434
87 : ->ThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSerThrGlnAsnValTyrS : 105
:!!||| ! !|||:!! !!|||||||||:!!! !||| !.!!! !|||||||||
laSerLeuGlyGluTyrSerAsnSerProTyrSerSerAspValAlaProAsnValTyrP
45435 : CTTCACTTGGTGAATACTCCAACTCGCCTTACTCATCTGATGTTGCACCAAATGTATATC : 45494
106 : erValProGlySerGlnTyrLeuTyrAsnGlnProSerCysTyrArgGlyPheGlnThrV : 125
!!:!! !!.!!|||!!.:!! !:!!|||.!. !!!.!! !:!!!!! !!! !:!!! !!
roIleAlaSerSerHisHisAspHisAsnAspSerLysTyrHisSerArgSerLysIleA
45495 : CCATAGCCAGCTCACACCATGATCATAATGACTCTAAATACCACAGTCGTTCCAAGATAG : 45554
126 : alLysHisArgAsnGluAsnThrCysProLeuProGlnGluMetLysAlaLeuPheLysL : 145
.!||| !! !! !|||.!.|||||||||:!! !!!.! !! !:! !:!!! !|||
laLysAspTyrIleGluGlnThrCysProValArgHisGlyThrArgAsnIleSerLysV
45555 : CTAAGGACTACATTGAACAAACGTGTCCAGTCAGACATGGGACTAGGAATATTTCTAAGG : 45614
146 : ysLysThr<->TyrAsp >>>> Target Intron 4 >>>> GluLysLysThrTy : 154
!!..||| |||..! 1135 bp ..!!.....! ! !
alSerThrPheTyrSer-+ ++ArgSerSerLysAs
45615 : TGAGCACATTCTACTCTtt.........................agAGGAGTTCTAAAGA : 46779
155 : rAspGlnGlnLysPheAspSerGluArgAlaAspGlyThrIleSerSerGluIleLysSe : 174
!|||:!!||||||!!.|||!.!:!!!:! !!!!:|||!.! !!!!! !!!:! !! !:!
pAspGluGlnLysLeuAspLysLysLysProGluGlyAsnAspThrPheAspLysMetAl
46780 : TGATGAGCAGAAATTGGATAAGAAAAAGCCTGAAGGAAATGACACATTTGACAAAATGGC : 46839
175 : rAlaArgGlySerHisHisLeuSerIleTyrAlaGluAsnSerLeuLysSer{A} >>> : 192
! !||| !!|||! !!!. !||| !|||!.!..!|||||||||!!...!{|}
aAsnArgArgSerLeuGlnThrSerAlaTyrGlyArgAsnSerLeuAsnGln{A}++
46840 : AAATAGAAGATCTCTTCAAACTTCTGCATATGGCAGAAATTCTTTGAATCAA{G}gt... : 46896
193 : > Target Intron 5 >>>> {sp}GlyTyrHisLysArgThrAspArgLysSerAr : 203
1394 bp {||} !!! !:!!||| !! !:!!|||||||||!:
++{sp}ArgCysAsnLysPheMetAsnArgLysSerLy
46897 : ......................ag{AC}AGGTGTAATAAATTTATGAACAGGAAATCAAA : 48320
204 : gIleIleAlaLysAsnValSerThrSerLysProGluPheGluPheThrThrLeuAspPh : 223
! :!! !!|||!:!! !! !..! !!||| !!! |||:!! !!||| !! !|||||
sGlnValProLysSerGluIleValProLysUnkAlaPheGlnValThrLeuSerAspPh
48321 : GCAGGTTCCAAAAAGTGAAATTGTTCCAAAANCCGCCTTTCAAGTTACCCTTTCGGATTT : 48380
224 : eProGluLeuGlnGlyAlaGluAsnAsnMetSerGluIleGlnLysGlnProLysTrpGl : 243
|||||||||||||.!! !! !!!.|||! ! ! !! ! !:!!! !||| ! ||
eProGluLeuGlnSerLeuGlyLysAsnAsnValLeuAspLeuProLysHisLysArgGl
48381 : CCCCGAGTTGCAGAGTTTAGGAAAAAATAATGTACTGGACCTACCAAAACATAAACGTGG : 48440
244 : yProValHisSerValSerThrAspIleSerLeuLeuArgGluValVal >>>> Targ : 260
|||| ! ! !!|||..! !|||:!!!!!|||! !|||..! !:!!
yProSerSerProValGluAspAspValThrLeuProArgArgProLeu--
48441 : GCCATCAAGTCCAGTTGAAGATGATGTTACGCTCCCGCGACGACCACTGac......... : 48493
261 : et Intron 6 >>>> LysProAlaAlaValLeuSerLysGlyGluIleValValLys : 273
921 bp ||| ! ! ! !! !!.!:!!..!|||:!!||||||:!!
++LysCysIleLeuGlnGlnLysGlnSerGluLeuValValGlu
48494 : ................agAAATGCATTTTGCAACAAAAGCAATCAGAACTTGTGGTAGAG : 49451
274 : >>>> Target Intron 7 >>>> AsnAsnProAsnGluSerValThrAlaAsnA : 284
870 bp |||!!. !!:!.!.||| !!..!!.!!..:
++ ++AsnLysLysSerHisSerPheValGlyArgS
49452 : gt.........................agAATAAAAAAAGCCACTCTTTTGTAGGAAGAA : 50354
285 : laAlaThrAsnSerProSerCys{T} >>>> Target Intron 8 >>>> {hr}A : 293
:! !!:!...! !! !||||||{|} 2570 bp {||}!
erLeuSerGly***GlnSerCys{T}++ ++{hr}P
50355 : GCCTCAGTGGATAACAAAGCTGC{A}gt.........................ag{CC}C : 52951
294 : rgGluLeuSer >>>> Target Intron 9 >>>> TrpThrProMetGlyTyrVa : 303
!..!:!!!.! 1207 bp |||.!!|||! ! ! ! :!
roArgValLys++ ++TrpAlaProThrThrGlnIl
52952 : CCAGAGTGAAAgt.........................agTGGGCACCAACGACCCAGAT : 54188
304 : lValArgGlnThr{L} >>>> Target Intron 10 >>>> {eu}SerThrGluL : 312
!|||!:! !{ } 2098 bp { !} ! ! !
eValGlnAlaTyr{A}++ ++{la}ValLeuProG
54189 : AGTTCAAGCCTAT{G}gt..........................ag{CA}GTACTTCCTC : 56313
313 : euSerAlaAlaProLysAsnValThrSerMetIleAsnLeuLysThrIleAlaSerSerA : 332
!:!!:!!||| !!..::!..! !||| .!!::!! ! !|||||| !!:!!..!
lnAlaSerAlaLysSerSerThrHisSerHisPheSerTrpAlaThrIleProAlaGlnP
56314 : AAGCATCTGCAAAGAGCTCCACTCATTCACATTTCTCTTGGGCAACTATACCAGCACAAC : 56373
333 : laAspProLysAsnValSerIleProSerSerGluAlaLeuSerSerAspProSerTyrA : 352
!! !! ! !||||||! !|||:!!|||!!:!.!||||||!!!..!! !||| !!!
roProLysThrValValSerThrProAlaSerAspValLeuSerArgSerHisSerAspS
56374 : CTCCAAAAACAGTTGTTTCAACACCAGCTTCTGATGTTCTATCCAGAAGCCATTCTGACA : 56433
353 : snLysGluLysHisIleIleHisProThrGlnLys >>>> Target Intron 11 > : 364
:!|||||||||!!. !|||!.. !!!.!...||| 870 bp
erLysGluLysGlnAspIleArgThrAsnSerLys++
56434 : GCAAAGAAAAACAAGATATTCGGACAAATAGTAAGgt....................... : 56471
365 : >>> SerLysAlaSerGlnGlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnL : 382
:!!||| !!..!:!!! !|||!!: :!!:!!!!.:!! !..!!:!|||!!.|
+-AlaLysProGluGluValSerGlu---LysLysLysLysArgGluLysLysLysL
56472 : ...aaGCTAAGCCTGAAGAAGTGTCAGAA---AAGAAGAAGAAAAGGGAAAAGAAGAAAA : 57390
383 : ysLysLysLysGluLysSerThrSerLysTyrGluValLeuThrValGlnGluProProA : 402
||||| !||| !...||| ! !:!! !!||| !:!!! !||||||! !|||||||
ysLysProLysProSerSerGluLeuGlnAsnGluAsnIleIleValGlnAlaProProA
57391 : AGAAACCAAAACCATCTTCTGAACTTCAAAATGAAAACATCATAGTACAAGCACCACCAA : 57450
403 : rgIleGlu >>>> Target Intron 12 >>>> AspAlaGluGluPheProAsnL : 412
|||||||| 4749 bp ||||||||||||||||||:!!|
rgIleGlu++ ++AspAlaGluGluPheProAspL
57451 : GAATTGAGgt..........................agGATGCTGAAGAGTTCCCTGACC : 62229
413 : euAlaValAlaSerGluArgArgAspArgIleGluThrProLysPheGln{S} >>>> : 429
||!.!!.!||||||!!:..!!:!..!|||!!::!!:!!! ! ! ! {!}
euValAlaAlaSerAspGluLysSerArgMetLysSerGlnHisSerAla{*}+-
62230 : TGGTAGCTGCTTCTGACGAAAAAAGCAGGATGAAATCTCAACATTCAGCT{T}gc..... : 62283
430 : Target Intron 13 >>>> {er}LysGlnGlnProGln >>>> Target Intr : 435
527 bp { !}!:!:!!:!! !||| 607 bp
-+{**}ArgLysLysMetGln++
62284 : .....................gg{AA}AGAAAGAAAATGCAGgt................ : 62827
436 : on 14 >>>> AspAsnPheLysAsnAsnValLysLysSerGlnLeuProValGlnLeu : 450
!!:!.!! !|||!.!!:!! !||||||||||||:!!||||||:!!|||
++GluThrSerLysThrSerGlyLysLysSerGlnIleProValLysLeu
62828 : ..........agGAAACTTCTAAGACCAGTGGTAAGAAGAGTCAGATTCCAGTCAAGTTG : 63477
451 : AspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAlaLysGln : 470
||||||||||||||||||.!!!.!||||||:!!||||||!!.:!!:!! ! !||||||
AspLeuGlyGlyMetLeuAlaValLeuGluGlnLysGlnGlnAlaGluLysLeuLysGln
63478 : GATTTGGGAGGTATGCTGGCTGTCTTGGAGCAGAAACAGCAAGCAGAGAAATTGAAACAG : 63537
471 : SerSerLysProValValValSer{V} >>>> Target Intron 15 >>>> {al : 479
||||||||| !!||||||:!!|||{|} 4326 bp {||
SerSerLysSerValValLeuSer{V}++ ++{al
63538 : TCCTCCAAATCTGTGGTGCTTTCA{G}gt..........................ag{TT : 67891
480 : }<->GlyAlaValProValLeuSerLysGluCysAlaSerGlyGluArgGlyArgArgMe : 498
} ||||||:!!|||:!!||||||||||||..! !! !! ! !!:!..!!:!!:!:!
}GlyGlyAlaIleProLeuLeuSerLysGluAlaAsnMetValThrLysAsnGlnGlnLe
67892 : }GGCGGTGCCATACCACTTCTTTCAAAGGAGGCTAACATGGTTACAAAAAATCAGCAGTT : 67950
499 : tSerGlnMetLysThrProHisAsnProLeuAspSerSerAlaProLeuMetLysLysGl : 518
!!:!||| |||||||||||||||||||||||||||||||||||||||:!:||||||||
uAsnGlnGlyLysThrProHisAsnProLeuAspSerSerAlaProLeuValLysLysGl
67951 : GAACCAAGGAAAAACACCTCATAATCCACTGGACTCCAGCGCTCCTTTGGTAAAAAAGGG : 68010
519 : yLysGlnArgGluIleProLysAlaLysLysProThrSerLeuLysLys >>>> Targ : 535
|||||||||||||:!!||||||||||||||||||||| !!|||||||||
yLysGlnArgGluValProLysAlaLysLysProThrProLeuLysLys++
68011 : AAAACAGAGAGAAGTCCCCAAAGCAAAGAAACCAACACCGCTTAAAAAGgt......... : 68063
536 : et Intron 16 >>>> IleIleLeuLysGluArgGlnGluArgLysGlnArg<->Le : 547
1099 bp ||||||||||||||||||:!!:!!|||||||||!:! ||
++IleIleLeuLysGluArgGluGlnArgLysGlnGlnHisLe
68064 : .................agATTATTTTGAAAGAGAGAGAACAAAGGAAGCAACAGCACCT : 69199
548 : uGlnGluAsnAlaValSerProAlaPheThrSerAspAspThrGlnAspGlyGluSerGl : 567
| !|||.!.|||!.!! !||| ! ! !..! !! ! !||| !! !||||||..
uLeuGluGlnAlaAlaIleProLysAspGluAspThrValHisGlnCysValGluSerSe
69200 : GTTAGAACAGGCTGCGATTCCAAAAGATGAAGATACTGTTCATCAGTGTGTCGAATCTTC : 69259
568 : yGlyAspAspGlnPheProGluGlnAla >>>> Target Intron 17 >>>> Gl : 577
!!.!!!:|||||| !! !!!: ! 836 bp !
rAlaGluAspGlnAlaGlnAspThrLys+- ++Va
69260 : TGCTGAAGATCAGGCTCAGGATACCAAAgc..........................agGT : 70125
578 : uLeuSerGlyPro{G} >>>> Target Intron 18 >>>> {lu}GlyMetAspG : 586
!|||..!..!|||{|} 2160 bp {||}! !!!:
lLeuGlnAsnPro{G}+- ++{lu}AspIle---P
70126 : GCTTCAAAATCCA{G}ga..........................ag{AA}GATATT---C : 72309
587 : luLeuIleSerThrProSerValGluAspLysSerGluGluProProGlyThrGluLeuG : 606
:!!! ||| ! ! !:!!:!!|||!..||||||! !! !! !!.! ! ! !!
roValThrSerLeuAspValIleGlnAspSerSerGluValLeuLeuAlaCysThrGluL
72310 : CTGTAACGTCCCTTGATGTGATTCAAGACAGTTCAGAAGTACTTCTGGCATGTACAGAGC : 72369
607 : lnArgAspThrGluAlaSerHisLeuAlaProAsn<-><->HisThrThrPheProLysI : 624
!:!|||:!!... !||| !! !.!! !||| :!!|||!.!.!!|||||||
euLysAspSerSerIleSerValProThrValAsnGlnLeuAsnThrAsnLeuProLysI
72370 : TCAAAGATTCAAGCATAAGTGTTCCCACTGTAAACCAGCTGAACACCAATCTTCCAAAAA : 72429
625 : leHisSerArgArgPheArg{As} >>>> Target Intron 19 >>>> {p}Tyr : 632
||||||||||||||||||||{||} 1761 bp {|}|||
leHisSerArgArgPheArg{As}++ ++{p}Tyr
72430 : TCCACAGCAGAAGATTTAGA{GA}gt..........................ag{T}TAC : 74214
633 : CysSerGlnMetLeuSerLysGluValAspAlaCysValThrAspLeuLeuLysGluLeu : 652
|||||||||:!!||||||||||||||||||::!|||||||||||||||||||||||||||
CysSerGlnValLeuSerLysGluValAspSerCysValThrAspLeuLeuLysGluLeu
74215 : TGCAGCCAGGTGCTTAGTAAAGAAGTCGACAGTTGTGTGACAGATCTTTTAAAGGAACTG : 74274
653 : ValArgPheGlnAspArgMetTyrGlnLysAspProValLysAlaLysThrLysArgArg : 672
||||||||||||||||||:!:|||||||||||||||||||||||||||||||||||||||
ValArgPheGlnAspArgLeuTyrGlnLysAspProValLysAlaLysThrLysArgArg
74275 : GTTCGTTTCCAAGATCGCTTATATCAGAAAGACCCAGTAAAGGCCAAGACAAAACGCAGG : 74334
673 : LeuValLeuGlyLeuArgGluValLeuLysHisLeuLysLeuLysLysLeuLysCysVal : 692
||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
LeuValMetGlyLeuArgGluValLeuLysHisLeuLysLeuLysLysLeuLysCysVal
74335 : CTTGTTATGGGGCTTCGAGAAGTTTTGAAGCACCTGAAGCTGAAAAAACTGAAATGTGTC : 74394
693 : IleIleSerProAsnCysGluLysIleGlnSerLys{G} >>>> Target Intron : 705
||||||||||||||||||||||||||||||||||||{|} 1084 bp
IleIleSerProAsnCysGluLysIleGlnSerLys{G}++
74395 : ATCATCTCTCCCAACTGTGAAAAGATTCAGTCAAAG{G}gt................... : 74436
706 : 20 >>>> {ly}GlyLeuAspAspThrLeuHisThrIleIleAspTyrAlaCysGluGl : 721
{||}|||||||||!!:|||||||||||||||||||||! !|||||||||||
++{ly}GlyLeuAspGluThrLeuHisThrIleIleAspCysAlaCysGluGl
74437 : .......ag{GA}GGGTTGGATGAGACTCTACATACCATTATTGACTGTGCTTGTGAGCA : 75565
722 : nAsnIleProPheValPheAlaLeuAsnArgLysAlaLeuGlyArgSerLeuAsnLysAl : 741
|||||||||||||||||||||||||||||||||||||||||||!.!!!!:!!||||||||
nAsnIleProPheValPheAlaLeuAsnArgLysAlaLeuGlyHisCysValAsnLysAl
75566 : GAATATCCCATTTGTCTTTGCCCTCAATCGCAAAGCTCTAGGGCATTGTGTGAACAAAGC : 75625
742 : aValProValSerValValGlyIlePheSerTyrAspGlyAlaGln >>>> Target : 757
|||||||||||||||||||||||||||||||||||||||||||||| 10
aValProValSerValValGlyIlePheSerTyrAspGlyAlaGln++
75626 : CGTGCCTGTCAGCGTGGTGGGAATTTTCAGCTATGATGGTGCTCAGgt............ : 75675
758 : Intron 21 >>>> AspGlnPheHisLysMetValGluLeuThrValAlaAlaArgGl : 771
65 bp |||!!.||||||!:!||||||:!!|||||||||! !||||||
++AspHisPheHisArgMetValGlnLeuThrValGluAlaArgTh
75676 : ..............agGACCACTTTCACAGAATGGTGCAGCTTACAGTGGAAGCCAGGAC : 76780
772 : nAlaTyrLysThrMetLeuGluAsnValGlnGlnGluLeuValGlyGluProArgProGl : 791
!|||||||||.!!|||:!!! ! :!!:!!:!!||| !!.!! !||| !!!! !:!
rAlaTyrLysAlaMetIleAlaAlaLeuGluGluGluAlaAlaGluGluGlySerGluLy
76781 : AGCATATAAAGCAATGATAGCAGCATTGGAGGAAGAGGCAGCTGAAGAAGGAAGTGAAAA : 76840
792 : nAlaProProSerLeuProThrGlnGlyProSerCysProAlaGluAspGlyProProAl : 811
!..! ! !!!!! ! ! !... !|||..! .!!... ! !.!|||! !!.
sCysAsnSerThrHisGluGluSerLeuProGlu------ThrSerLysAlaProHisVa
76841 : ATGCAACAGCACTCATGAAGAGAGTTTGCCAGAG------ACCAGTAAAGCACCCCATGT : 76894
812 : aLeuLysGluLysGluGluProHisTyr{I} >>>> Target Intron 22 >>>> : 821
! !...!!: ! !!:! |||:!!|||{|} 1646 bp
lGluSerAspAspAspValProAsnTyr{I}++ +
76895 : GGAATCTGATGATGACGTTCCAAATTAC{A}gt..........................a : 78569
822 : {le}GluIleTrpLysLysHisLeu<->GluAlaTyrSerGlyCysThrLeuGluLeuG : 839
{||}:!!||||||!:!!:! ! ||| |||! !|||||| !! !.!!||||||||||
+{le}LysIleTrpArgArgLysLeuGluGluGluTyrSerProTyrAlaLeuGluLeuG
78570 : g{TT}AAAATCTGGAGGAGAAAACTTGAGGAGGAGTATAGCCCTTATGCTTTGGAATTAG : 78627
840 : luGluSerLeuGluAla : 844
||:!!||| ! |||
luLysSerAlaThrAla
78628 : AAAAGAGTGCAACTGCG : 78644
vulgar: SPP00000054_2.0 0 844 . gi|397459409|gb|JH736092.1|:subseq(0,100000) 11801 78644 + 1368 M 10 30 S 0 2 5 0 2 I 0 3799 3 0 2 S 1 1 M 1 3 5 0 2 I 0 24508 3 0 2 M 48 144 S 0 2 5 0 2 I 0 5049 3 0 2 S 1 1 M 24 72 G 0 12 M 62 186 G 0 3 M 2 6 5 0 2 I 0 1131 3 0 2 M 42 126 S 0 1 5 0 2 I 0 1390 3 0 2 S 1 2 M 67 201 5 0 2 I 0 917 3 0 2 M 14 42 5 0 2 I 0 866 3 0 2 M 18 54 S 0 1 5 0 2 I 0 2566 3 0 2 S 1 2 M 4 12 5 0 2 I 0 1203 3 0 2 M 11 33 S 0 1 5 0 2 I 0 2094 3 0 2 S 1 2 M 55 165 5 0 2 I 0 866 3 0 2 M 8 24 G 1 0 M 32 96 5 0 2 I 0 4745 3 0 2 M 24 72 S 0 1 5 0 2 I 0 523 3 0 2 S 1 2 M 5 15 5 0 2 I 0 603 3 0 2 M 44 132 S 0 1 5 0 2 I 0 4322 3 0 2 S 1 2 G 0 3 M 55 165 5 0 2 I 0 1095 3 0 2 M 12 36 G 0 3 M 30 90 5 0 2 I 0 832 3 0 2 M 5 15 S 0 1 5 0 2 I 0 2156 3 0 2 S 1 2 M 2 6 G 1 0 M 32 96 G 0 6 M 13 39 S 0 2 5 0 2 I 0 1757 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 1080 3 0 2 S 1 2 M 51 153 5 0 2 I 0 1061 3 0 2 M 46 138 G 2 0 M 16 48 S 0 1 5 0 2 I 0 1642 3 0 2 S 1 2 M 7 21 G 0 3 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local gene 11802 78644 1368 + . gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation +
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 11802 11833 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 11802 11833 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 11834 11835 . + . intron_id 1 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 11834 15636 . + . intron_id 1
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 15635 15636 . + . intron_id 0 ; splice_site "AA"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 15637 15640 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 15637 15640 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 15641 15642 . + . intron_id 2 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 15641 40152 . + . intron_id 2
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 40151 40152 . + . intron_id 1 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 40153 40298 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 40153 40298 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 40299 40300 . + . intron_id 3 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 40299 45351 . + . intron_id 3
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 45350 45351 . + . intron_id 2 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 45352 45631 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 45352 45631 . + . insertions 15 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 45632 45633 . + . intron_id 4 ; splice_site "TT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 45632 46766 . + . intron_id 4
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 46765 46766 . + . intron_id 3 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 46767 46893 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 46767 46893 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 46894 46895 . + . intron_id 5 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 46894 48287 . + . intron_id 5
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 48286 48287 . + . intron_id 4 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 48288 48490 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 48288 48490 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 48491 48492 . + . intron_id 6 ; splice_site "AC"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 48491 49411 . + . intron_id 6
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 49410 49411 . + . intron_id 5 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 49412 49453 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 49412 49453 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 49454 49455 . + . intron_id 7 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 49454 50323 . + . intron_id 7
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 50322 50323 . + . intron_id 6 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 50324 50378 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 50324 50378 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 50379 50380 . + . intron_id 8 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 50379 52948 . + . intron_id 8
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 52947 52948 . + . intron_id 7 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 52949 52962 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 52949 52962 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 52963 52964 . + . intron_id 9 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 52963 54169 . + . intron_id 9
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 54168 54169 . + . intron_id 8 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 54170 54203 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 54170 54203 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 54204 54205 . + . intron_id 10 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 54204 56301 . + . intron_id 10
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 56300 56301 . + . intron_id 9 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 56302 56468 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 56302 56468 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 56469 56470 . + . intron_id 11 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 56469 57338 . + . intron_id 11
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 57337 57338 . + . intron_id 10 ; splice_site "AA"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 57339 57458 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 57339 57458 . + . insertions 0 ; deletions 1
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 57459 57460 . + . intron_id 12 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 57459 62207 . + . intron_id 12
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 62206 62207 . + . intron_id 11 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 62208 62280 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 62208 62280 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 62281 62282 . + . intron_id 13 ; splice_site "GC"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 62281 62807 . + . intron_id 13
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 62806 62807 . + . intron_id 12 ; splice_site "GG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 62808 62824 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 62808 62824 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 62825 62826 . + . intron_id 14 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 62825 63431 . + . intron_id 14
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 63430 63431 . + . intron_id 13 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 63432 63564 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 63432 63564 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 63565 63566 . + . intron_id 15 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 63565 67890 . + . intron_id 15
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 67889 67890 . + . intron_id 14 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 67891 68060 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 67891 68060 . + . insertions 3 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 68061 68062 . + . intron_id 16 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 68061 69159 . + . intron_id 16
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 69158 69159 . + . intron_id 15 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 69160 69288 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 69160 69288 . + . insertions 3 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 69289 69290 . + . intron_id 17 ; splice_site "GC"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 69289 70124 . + . intron_id 17
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 70123 70124 . + . intron_id 16 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 70125 70140 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 70125 70140 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 70141 70142 . + . intron_id 18 ; splice_site "GA"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 70141 72300 . + . intron_id 18
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 72299 72300 . + . intron_id 17 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 72301 72451 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 72301 72451 . + . insertions 6 ; deletions 1
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 72452 72453 . + . intron_id 19 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 72452 74212 . + . intron_id 19
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 74211 74212 . + . intron_id 18 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 74213 74433 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 74213 74433 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 74434 74435 . + . intron_id 20 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 74434 75517 . + . intron_id 20
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 75516 75517 . + . intron_id 19 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 75518 75672 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 75518 75672 . + . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 75673 75674 . + . intron_id 21 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 75673 76737 . + . intron_id 21
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 76736 76737 . + . intron_id 20 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 76738 76924 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 76738 76924 . + . insertions 0 ; deletions 2
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 76925 76926 . + . intron_id 22 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 76925 78570 . + . intron_id 22
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 78569 78570 . + . intron_id 21 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 78571 78644 . + .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 78571 78644 . + . insertions 3 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local similarity 11802 78644 1368 + . alignment_id 1 ; Query SPP00000054_2.0 ; Align 11802 1 30 ; Align 15638 12 3 ; Align 40153 13 144 ; Align 45353 62 72 ; Align 45437 86 186 ; Align 45626 148 6 ; Align 46767 150 126 ; Align 48290 193 201 ; Align 49412 260 42 ; Align 50324 274 54 ; Align 52951 293 12 ; Align 54170 297 33 ; Align 56304 309 165 ; Align 57339 364 24 ; Align 57363 373 96 ; Align 62208 405 72 ; Align 62810 430 15 ; Align 63432 435 132 ; Align 67896 480 165 ; Align 69160 535 36 ; Align 69199 547 90 ; Align 70125 577 15 ; Align 72303 583 6 ; Align 72309 586 96 ; Align 72411 618 39 ; Align 74214 632 219 ; Align 75520 706 153 ; Align 76738 757 138 ; Align 76876 805 48 ; Align 78573 822 21 ; Align 78597 829 48
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human (Homo sapiens)
Target: gi|397459409|gb|JH736092.1|:subseq(0,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-8255, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 106
Query range: 305 -> 627
Target range: 91247 -> 3279
306 : GlnThrLeuSerThrGluLeuSerAlaAlaProLysAsnVal{T} >>>> Target I : 320
|||!.! !||| !:!!!!!|||!.!.!!|||:!!|||!.!{!} 6263
GlnAsnLysSerCysGlnPheSerValThrProGluAsnAla{L}++
91247 : CAAAACAAGTCATGTCAATTTTCAGTAACTCCTGAGAATGCA{A}gt............. : 91202
321 : ntron 1 >>>> {hr}SerMetIleAsnLeuLysThrIleAlaSerSerAlaAspPro : 334
bp { !}|||!!: !!!.:!!||| ! ! !..!!!!|||! !
++{ys}SerIleCysLysIleLysTrp***MetAspThrAlaGlyLys
91201 : ............ag{AG}AGTATATGTAAGATTAAATGGTAAATGGACACAGCTGGGAAA : 84900
335 : LysAsnValSerIleProSerSerGluAlaLeuSerSerAsp{P} >>>> Target I : 349
|||||| !!!!:!!|||||||||:!! !||||||!.!|||{ } 5251
LysAsnSerCysLeuProSerSerLysGlnLeuSerLysAsp{G}++
84899 : AAGAACAGCTGCCTTCCATCTTCAAAACAGCTGTCTAAGGAT{G}gt............. : 84852
350 : ntron 2 >>>> {ro}SerTyrAsnLysGluLysHisIleIleHisProThrGlnLys : 363
bp { !}!!! ! :::::!|||! !! !|||:!:! !|||..!!!.|||
+-{ly}ThrGlnSerArgGluThrProIleLeuLeuProValHisLys
84851 : ............aa{GC}ACCCAGTCACGGGAGACACCTATCCTGCTCCCAGTCCACAAG : 79562
364 : SerLys{A} >>>> Target Intron 3 >>>> {la}SerGlnGlySerAspLeu : 372
!!!|||{!} 2537 bp {.!}|||.!. !!!!..!! !
ArgLys{V}+- +-{al}SerAsnTyrThrSerCys
79561 : AGGAAG{G}gg.........................ac{TT}TCTAATTATACATCTTGT : 76998
373 : GluGlnAsnGluAlaSerArgLysAsnLysLysLysLysGluLysSerThrSerLysTyr : 392
:!!... ! ! ! !!||||||!.! ! :!!|||:!!:!!|||! !!!!!:!|||
LysSerAlaLeuGlnArgArgLysThr***ValGlnLysLysGluSerLysThrArgTyr
76997 : AAGTCTGCTCTACAACGAAGGAAAACTTGAGTTCAGAAAAAGGAAAGCAAAACAAGGTAC : 76938
393 : GluValLeuThr >>>> Target Intron 4 >>>> ValGlnGluProProArgI : 403
:!!!.!|||||| 15992 bp :!!!:!! !|||||||||:
GlnAlaLeuThr++ ++MetArgGlyProProArgV
76937 : CAAGCACTCACTgt.........................agATGCGAGGGCCACCCAGGG : 60913
404 : leGluAspAlaGluGluPhePro{As} >>>> Target Intron 5 >>>> {n}L : 412
!!..! ::!.!.:!! !|||{!:} 2624 bp {!}|
alArgArgSerAsnGlnAspPro{Se}+- ++{r}L
60912 : TCAGAAGAAGCAACCAAGATCCA{AG}ga.........................ag{C}C : 58262
413 : euAlaValAlaSerGluArgArgAspArgIleGluThrProLysPheGlnSerLysGlnG : 432
|| ! ! !!!! !||| !!|||! !:!:! .!! !|||||| !!! ! !|
euArgLysArgArgLeuArgGlyAspLeuValAlaAlaUnkLysPheIleThrGlyAlaG
58261 : TCCGCAAGAGAAGGTTGAGAGGCGACCTTGTGGCTGCCTNTAAGTTCATCACGGGGGCAC : 58202
433 : lnPro >>>> Target Intron 6 >>>> GlnAspAsnPheLysAsnAsnValLy : 442
|| ! 9320 bp :!! !::!.!!||||||:::|||:!
lnLys+- ++GluIleSerIleLysAsnSerValGl
58201 : AGAAGgg.........................agGAAATCTCTATTAAAAACTCAGTACA : 48852
443 : sLysSerGlnLeuProValGlnLeuAsp{L} >>>> Target Intron 7 >>>> : 452
! !!!! ! ! !! ! ||| !{:} 2188 bp
nTrpThrTyrLysArgGlyThrLeuPhe{V}++ ++
48851 : GTGGACTTACAAAAGAGGAACTTTATTT{G}gt.........................ag : 46635
453 : {eu}GlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAlaLysGlnSe : 471
{!!}!.!||||||:!!.!! ! !|||||| ...|||!!!! :!!..!|||::!
{al}AlaGlyMetValAlaTrpThrGluLysLeuSerHisThrProAsnCysLysArgHi
46634 : {TT}GCAGGAATGGTGGCCTGGACTGAAAAGCTCAGCCACACCCCCAATTGCAAAAGGCA : 46577
472 : rSerLysProValValValSer >>>> Target Intron 8 >>>> ValGlyAla : 481
!..!!:!||||||:!!:!!..! 13814 bp !.!||| !
sAspArgProValIleIleGln-+ ++AlaGlyArg
46576 : TGATAGACCAGTGATAATACAAat.........................agGCTGGCAGA : 32733
482 : ValProValLeuSerLysGluCysAlaSerGlyGluArgGlyArgArgMetSerGlnMet : 501
||||||!.!! !!.! ! ! !:!!|||:!!!!!||||||!:! ! !::!..!
ValProAlaTyrLysGlyLeuLeuArgAlaGlyGlnSerGlyArgLysAlaIleArgGln
32732 : GTTCCAGCCTACAAGGGGCTTCTTAGGGCTGGGCAGAGCGGGAGGAAGGCAATCAGGCAG : 32673
502 : LysThrProHisAsnProLeuAspSerSer{Al} >>>> Target Intron 9 >>> : 512
!..!|||||| ! !..!..!:!!{!.} 4085 bp
GlyValProHisAlaTyrGlySerGlnAla{Gl}++
32672 : GGGGTGCCACATGCATATGGCAGCCAGGCA{GG}gt........................ : 32636
513 : > {a}ProLeuMetLys >>>> Target Intron 10 >>>> LysGlyLysGln : 520
{!}||||||:!! !! 2744 bp |||||||||
++{y}ProLeuLeu***++ ++LysGlyLys---
32635 : .ag{G}CCTCTGCTGTAAgt..........................agAAGGGGAAG--- : 25787
521 : ArgGluIleProLysAlaLysLysProThrSerLeuLysLysIleIleLeuLysGluArg : 540
|||||| !||| ! ! !:!|||..!||||||! ...||| ! !||| ! !
ArgGluAspProGlyAsnTyrArgProValSerLeuThrSerIleProAlaLysIleLeu
25786 : AGGGAGGACCCGGGCAATTATAGGCCAGTCAGCCTAACCTCCATCCCAGCGAAAATCCTG : 25730
541 : GlnGluArgLysGlnArgLeuGlnGluAsnAlaValSerProAlaPheThrSerAspAsp : 560
:!!:!!! !! :!!!:!! !..!.....! !:!!! ! !!.! ! ! !:!!:!!
GluLysLeuIleLysLysSerMetSerGlyMetLeuIleValGlyLysIleLeuAsnAsn
25729 : GAAAAACTCATTAAAAAATCTATGAGCGGTATGCTCATTGTGGGTAAGATTCTGAACAAC : 25670
561 : ThrGlnAspGlyGluSerGly{G} >>>> Target Intron 11 >>>> {ly}{A : 569
!:!||| !!||| ! !{|} 9291 bp {||}{
SerGlnHisGlyPheValThr{G}++ ++{ly}{A
25669 : AGCCAGCATGGCTTCGTCACG{G}gt..........................ag{GA}{A : 16352
570 : } >>>> Target Intron 12 >>>> {sp}AspGlnPheProGluGlnAlaGluL : 578
} 4477 bp { }:!!! |||..!...|||||||
}++ ++{rg}AsnProProProArgSerAlaGluL
16351 : }gt..........................ag{GG}AACCCCCCACCCCGGTCTGCAGAAT : 11848
579 : euSerGlyProGluGlyMetAspGluLeuIleSerThrProSerValGluAspLysSerG : 598
||:!!||| !.!. ! !! !!:|||:!! !! !|||:!! !..!! !! !.!!!
euAlaGlyAsnHisLeuArgGlyAspLeuLeuProGlnProAlaArgSerAlaThrGlyG
11847 : TGGCTGGGAATCACCTGCGGGGGGACCTGCTCCCCCAGCCTGCGAGATCGGCCACAGGGG : 11788
599 : luGluProProGlyThrGluLeuGlnArgAsp{Th} >>>> Target Intron 13 : 609
! ||||||!.!:!!!!:! !! !! !! {!:} 8419 bp
lyCysProProAlaSerAspCysLeuLeuGly{Se}+-
11787 : GATGCCCCCCAGCCTCTGACTGTCTGCTGGGG{AG}gc...................... : 11751
610 : >>>> {r}GluAlaSerHisLeuAlaProAsnHisThrThrPheProLysIleHisSer : 626
{!} |||||||||!!! !||||||! ! !! !|||!:!|||.....!
++{r}ThrAlaSerHisPhe***ProAsnLeuGluProProProArgIleArgGln
11750 : ....ag{T}ACTGCCTCTCATTTCTAGCCCAACCTGGAACCTCCTCCCAGGATCAGGCAA : 3285
627 : Arg : 627
|||
Arg
3284 : AGA : 3280
vulgar: SPP00000054_2.0 305 627 . gi|397459409|gb|JH736092.1|:subseq(0,100000) 91247 3279 - 106 M 14 42 S 0 1 5 0 2 I 0 6259 3 0 2 S 1 2 M 28 84 S 0 1 5 0 2 I 0 5247 3 0 2 S 1 2 M 16 48 S 0 1 5 0 2 I 0 2533 3 0 2 S 1 2 M 30 90 5 0 2 I 0 15988 3 0 2 M 14 42 S 0 2 5 0 2 I 0 2620 3 0 2 S 1 1 M 22 66 5 0 2 I 0 9316 3 0 2 M 18 54 S 0 1 5 0 2 I 0 2184 3 0 2 S 1 2 M 26 78 5 0 2 I 0 13810 3 0 2 M 33 99 S 0 2 5 0 2 I 0 4081 3 0 2 S 1 1 M 4 12 5 0 2 I 0 2740 3 0 2 M 3 9 G 1 0 M 47 141 S 0 1 5 0 2 I 0 9287 3 0 2 S 1 3 5 0 2 I 0 4473 3 0 2 S 1 2 M 39 117 S 0 2 5 0 2 I 0 8415 3 0 2 S 1 1 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local gene 3280 91247 106 - . gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation +
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 91205 91247 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 91205 91247 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 91203 91204 . - . intron_id 1 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 84942 91204 . - . intron_id 1
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 84942 84943 . - . intron_id 0 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 84855 84941 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 84855 84941 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 84853 84854 . - . intron_id 2 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 79604 84854 . - . intron_id 2
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 79604 79605 . - . intron_id 1 ; splice_site "AA"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 79553 79603 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 79553 79603 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 79551 79552 . - . intron_id 3 ; splice_site "GG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 77016 79552 . - . intron_id 3
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 77016 77017 . - . intron_id 2 ; splice_site "AC"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 76924 77015 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 76924 77015 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 76922 76923 . - . intron_id 4 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 60932 76923 . - . intron_id 4
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 60932 60933 . - . intron_id 3 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 60888 60931 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 60888 60931 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 60886 60887 . - . intron_id 5 ; splice_site "GA"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 58264 60887 . - . intron_id 5
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 58264 58265 . - . intron_id 4 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 58197 58263 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 58197 58263 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 58195 58196 . - . intron_id 6 ; splice_site "GG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 48877 58196 . - . intron_id 6
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 48877 48878 . - . intron_id 5 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 48822 48876 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 48822 48876 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 48820 48821 . - . intron_id 7 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 46634 48821 . - . intron_id 7
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 46634 46635 . - . intron_id 6 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 46554 46633 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 46554 46633 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 46552 46553 . - . intron_id 8 ; splice_site "AT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 32740 46553 . - . intron_id 8
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 32740 32741 . - . intron_id 7 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 32639 32739 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 32639 32739 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 32637 32638 . - . intron_id 9 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 28554 32638 . - . intron_id 9
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 28554 28555 . - . intron_id 8 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 28541 28553 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 28541 28553 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 28539 28540 . - . intron_id 10 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 25797 28540 . - . intron_id 10
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 25797 25798 . - . intron_id 9 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 25646 25796 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 25646 25796 . - . insertions 0 ; deletions 1
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 25644 25645 . - . intron_id 11 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 16355 25645 . - . intron_id 11
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 16355 16356 . - . intron_id 10 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 16352 16354 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 16352 16354 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 16350 16351 . - . intron_id 12 ; splice_site "GT"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 11875 16351 . - . intron_id 12
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 11875 11876 . - . intron_id 11 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 11754 11874 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 11754 11874 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice5 11752 11753 . - . intron_id 13 ; splice_site "GC"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local intron 3335 11753 . - . intron_id 13
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local splice3 3335 3336 . - . intron_id 12 ; splice_site "AG"
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local cds 3280 3334 . - .
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local exon 3280 3334 . - . insertions 0 ; deletions 0
gi|397459409|gb|JH736092.1|:subseq(0,100000) exonerate:protein2genome:local similarity 3280 91247 106 - . alignment_id 1 ; Query SPP00000054_2.0 ; Align 91248 306 42 ; Align 84940 321 84 ; Align 79602 350 48 ; Align 77014 367 90 ; Align 60932 397 42 ; Align 58263 412 66 ; Align 48877 434 54 ; Align 46632 453 78 ; Align 32740 479 99 ; Align 28553 513 12 ; Align 25797 517 9 ; Align 25788 521 141 ; Align 11873 570 117 ; Align 3334 610 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis