Find start end points: [15,49710][293,53534] Score 94918
Recovering alignment: Alignment recovered] Explicit read offe 95%%
genewise output
Score 273.88 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
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Information
Name gi|397460868|gb|JH734633.1|:subseq(120000,100000) is longer than
allowed name block (15). Truncating
SPP00000052_2.0 16 RKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGV--VAYDDVMP-D
R GLCVLCGLPAAGK+T L RL+Q++GW +YDD++P
RGLGLCVLCGLPAAGKTT----LTQRLKQQRGWDWDCFRLSYDDLIPLE
gi|397460868|gb49709 cgcgctgttgccgggaaa cacccaccagtgtgttccttggcaccg
ggtgtgttggtcccgacc tcagtaaagggagagtgtcaaattcta
gcgtgcggcggcagcgcg aggcggggacgcgtccctcctcctggg
SPP00000052_2.0 62 AF---LAGA---RARPA PSQWKLLRQ
AF GA R P S+WK RQ
AFSQSVPGAGLERDHPL VSRWKSYRQ
gi|397460868|gb49844 gtactgcgggcgcgcctGTTGGTA Intron 1 TAGgtctattcc
ctgactcgcgtagaact<0-----[49895:51588]-0>tcggacaga
cccaagggggtaattag ggcgaacgg
SPP00000052_2.0 82 ELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFE
ELL YLE+FL+A++NG +S P +RTEA WE F++C ++Q LI S +
ELLVYLEHFLQALLNGDPLSAPASRTEATWERFVSCFREQGLISSDVPD
gi|397460868|gb51616 gccgtcgctccgccaggcctgcgaaaggatgctgtttagcgtattggcg
atttataattacttagactccccggcaccgagttcgtgaagttccatca
aggactatcggttttgtcgtcaacgaaccgatttcccaaaaaatacatt
SPP00000052_2.0 131 AQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK
A+SC + SRPL +LDDNFYYQSMRYEVYQLARK
AKSCRYVINATASRPLCFILDDNFYYQSMRYEVYQLARK
gi|397460868|gb51763 gattctgaagagtaccttatggatttcaaatggtccgca
cacggattaccccgctgtttaaataaagtgaataatcga
tattttgctcctcaagtctgtcctttacgacaacgatca
SPP00000052_2.0 170 SLGFCQLFLDCPLETCLQRNGQR
SLGFCQLFLDCPLE CLQRN R
Y:Y[tat] SLGFCQLFLDCPLECCLQRNRVR
gi|397460868|gb51880 TGTAATTT Intron 2 TAGATttgttctttgtccgtttcaacga
<1-----[51881:52175]-1> ctgtgatttagctaggtagagtg
aacccgatactataccaggtcga
SPP00000052_2.0 194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA
Q LP E I LM +K+E PN +KN WE NSLT+ SE
SQPLPDEIICLMAKKIEAPNLDKNTWEQNSLTLKGLEYTSED
gi|397460868|gb52247 acctcggaatcagaaaggcacgaaatgcaacacagcgtatgg
gactcaattgttcaataccataaacgaaagtctagtaaccaa
tgcatcgcatagaagaaaatttatcgaattctgagtactaat
SPP00000052_2.0 236 LEVTDLLLTALENPVKYAEDNME
L+V LL+TAL+NPVK E+N+E
S:N[aat] LQVISLLVTALKNPVKQIEENIE
gi|397460868|gb52373 AAGTATGTT Intron 3 TAGTtcgaactgagtaacgacaggaag
<2-----[52375:52796]-2> tattgtttcctaactaataaata
agaccggtttgatagaataattg
SPP00000052_2.0 260 QK DTDRIICSTNILHKTDQTLRRIVS
QK DR IC+ +ILH+ DQT RRI+S
QK AADRAICAASILHQADQTFRRIIS
gi|397460868|gb52867 caGTACACT Intron 4 CAGgggcgatggaacccggcatacaat
aa<0-----[52873:53436]-0>ccagctgccgttaacaactggttc
ag aataactattcctattgttaattt
SPP00000052_2.0 286 QTMKEAKGN
QTMK+AKGN
QTMKDAKGN
gi|397460868|gb53509 caaaggaga
actaacaga
aaggtaatt
//
Making a Y in phase 1 intron
Making a N in phase 2 intron
>gi|397460868|gb|JH734633.1|:subseq(120000,100000).pep
RGLGLCVLCGLPAAGKTTLTQRLKQQRGWDWDCFRLSYDDLIPLEAFSQSVPGAGLERDH
PLVSRWKSYRQELLVYLEHFLQALLNGDPLSAPASRTEATWERFVSCFREQGLISSDVPD
AKSCRYVINATASRPLCFILDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLECCLQRN
RVRSQPLPDEIICLMAKKIEAPNLDKNTWEQNSLTLKGLEYTSEDNLQVISLLVTALKNP
VKQIEENIEQKAADRAICAASILHQADQTFRRIISQTMKDAKGN
//
>gi|397460868|gb|JH734633.1|:subseq(120000,100000).[49709:53535].sp
CGGGGCCTGGGTCTGTGCGTGTTGTGCGGGCTGCCCGCAGCGGGCAAGACCACGCTAACG
CAGCGCCTGAAGCAGCAGAGAGGCTGGGACTGGGATTGCTTCCGCCTTTCCTACGATGAC
CTCATTCCGCTGGAGGCCTTCAGCCAATCAGTGCCGGGGGCGGGGCTTGAACGAGATCAT
CCATTGGTGTCGCGCTGGAAATCATACCGGCAGGAACTGCTGGTATACCTTGAACATTTC
CTGCAGGCTCTTCTTAATGGGGATCCCCTGTCTGCCCCAGCAAGCAGGACAGAAGCCACC
TGGGAACGTTTTGTTTCCTGCTTCAGAGAACAAGGATTAATATCTTCAGACGTACCTGAT
GCTAAATCTTGTCGTTATGTGATCAATGCCACCGCTTCCAGACCACTGTGTTTCATTTTG
GATGACAACTTTTATTATCAAAGCATGAGATACGAAGTATACCAGCTAGCTCGCAAATAT
TCATTAGGCTTCTGCCAGTTATTTTTAGACTGTCCACTTGAATGCTGCTTACAGAGGAAT
CGCGTGAGAAGTCAGCCCTTACCTGACGAGATCATATGTCTAATGGCAAAAAAGATAGAA
GCACCAAATCTTGATAAAAATACCTGGGAACAAAATAGTCTCACTCTGAAAGGGCTTGAA
TACACTTCAGAAGATAATTTACAGGTAATCAGCCTGTTGGTTACTGCTTTGAAAAATCCA
GTGAAACAAATTGAAGAAAATATTGAGCAAAAGGCAGCAGATCGAGCAATCTGTGCAGCT
AGTATCCTCCATCAAGCTGATCAGACTTTTAGACGAATTATTTCTCAAACAATGAAGGAT
GCAAAAGGTAAT
//
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise match 49709 53535 281.86 + . gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise cds 49709 49894 0.00 + 0 gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise intron 49895 51588 0.00 + . gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise cds 51589 51880 0.00 + 0 gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise intron 51881 52175 0.00 + . gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise cds 52176 52374 0.00 + 2 gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise intron 52375 52796 0.00 + . gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise cds 52797 52872 0.00 + 1 gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise intron 52873 53436 0.00 + . gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1
gi|397460868|gb|JH734633.1|:subseq(120000,100000) GeneWise cds 53437 53535 0.00 + 0 gi|397460868|gb|JH734633.1|:subseq(120000,100000)-genewise-prediction-1