Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/GPX6.fa -t gi|397463514|gb|JH731987.1|subseq.fa]
Hostname: [ws101062]
C4 Alignment:
------------
Query: SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Human (Homo sapiens)
Target: gi|397463514|gb|JH731987.1|:subseq(150000,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-1586, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 715
Query range: 23 -> 221
Target range: 59292 -> 60578
24 : LysProGlnAsnArgLysValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyr : 43
:::||| ! !:!!|||:!!||| !!!....!||| !||||||:!!|||!!:|||
ArgProAlaValPheGlnValAsnCysTyrSerAsnValGlyGlyThrValTyrAspTyr
59293 : CGCCCGGCTGTCTTCCAGGTGAACTGCTACAGCAATGTGGGTGGCACAGTCTATGACTAC : 59350
44 : GlyAlaLeuThrLeuAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHis : 63
||||||||||||:!!:!!||||||||||||:!!! ||||||::!!:!|||||||||
GlyAlaLeuThrIleAspGlyGluGluTyrValProPheLysArgTyrAlaGlyLysMet
59351 : GGGGCCCTCACCATCGACGGGGAAGAGTACGTCCCCTTCAAGAGGTACGCGGGGAAGATG : 59410
64 : ValLeuPheValAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G} >>>> : 81
:!!||||||||||||||||||.!!||| ||||||.!! !|||||| !{|}
IleLeuPheValAsnValAlaThrTyr***GlyLeuThrMetGlnTyrVal{G}++
59411 : ATCCTCTTCGTCAACGTGGCCACGTACTGAGGGCTCACCATGCAGTACGTT{G}gt.... : 59467
82 : Target Intron 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPhe : 92
471 bp {||}|||||||||||||||...|||||| ! !!:!
++{lu}LeuAsnAlaLeuGlnSerGluLeuGlyProTyr
59468 : .....................ag{AA}CTGAATGCACTACAAAGCGAACTGGGGCCCTAC : 59968
93 : GlyValIleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsn : 112
|||:!!:!!:!!|||!.!||||||! !||||||||||||||||||||||||||| !|||
GlyLeuValIleLeuGlyPheProSerAsnGlnPheGlyLysGlnGluProGlyGlnAsn
59969 : GGACTCGTCATCCTGGGCTTCCCCTCCAACCAGTTTGGGAAACAAGAACCCGGCCAGAAC : 60028
113 : SerGluIleLeuLeuGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}Tyr : 121
:!!|||||||||! !!.!|||{||} 138 bp {|}|||
AlaGluIleLeuProAlaLeu{Ly}++ ++{s}Tyr
60029 : GCCGAGATCCTTCCTGCCCTG{AA}gt.........................ag{A}TAC : 60193
122 : ValCysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsn : 141
||| !!||||||.!!||||||!.!|||!:!||||||||||||:!!|||||||||||||||
ValArgProGlyGlyGlyPheAlaProAsnPheGlnLeuPheGlnLysGlyAspValAsn
60194 : GTCCGCCCGGGGGGAGGCTTCGCCCCCAATTTCCAGCTCTTCCAGAAGGGTGACGTGAAC : 60253
142 : GlyGluLysGluGlnLysValPheThrPheLeuLys >>>> Target Intron 3 > : 154
|||||||||||||||||||||!:!|||||||||||| 83 bp
GlyGluLysGluGlnLysValTyrThrPheLeuLys++
60254 : GGGGAGAAGGAACAGAAGGTCTACACCTTCCTCAAGgt...................... : 60294
155 : >>> AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpG : 172
|||||||||||||||..! !!!: !!!!|||..! !!!.!:!!||||||||||
++AsnSerCysProProValValGluAsnPheGlyAspProLysLysLeuPheTrpG
60295 : ...agAACTCCTGCCCTCCCGTGGTGGAAAACTTTGGAGACCCCAAGAAGCTTTTCTGGG : 60429
173 : luProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspG : 192
|||||:!!|||:!!|||||||||!:!||||||||||||||||||||||||||||||||||
luProLeuLysIleHisAspIleLysTrpAsnPheGluLysPheLeuValGlyProAspG
60430 : AGCCCCTGAAGATCCACGACATCAAGTGGAACTTCGAGAAGTTCCTGGTGGGGCCGGACG : 60489
193 : lyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSerAspIleL : 212
||||||||||||||!..|||!:!|||!::||| !:!!:!!|||||||||!:!||||||:
lyValProValMetArgTrpTyrHisArgAlaAsnIleAlaThrValLysAsnAspIleM
60490 : GGGTGCCGGTGATGCGGTGGTACCACCGCGCCAACATCGCCACGGTGAAGAACGACATCA : 60549
213 : euGluTyrLeuLysGlnPheAsnThrHis : 221
!!||||||:!!||| :!! !!|||
etGluTyrMetLysAlaGlnHisProHis
60550 : TGGAGTACATGAAGGCCCAGCACCCACAC : 60578
vulgar: SPP00000038_2.0 23 221 . gi|397463514|gb|JH731987.1|:subseq(150000,100000) 59292 60578 + 715 M 57 171 S 0 1 5 0 2 I 0 467 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 134 3 0 2 S 1 1 M 33 99 5 0 2 I 0 79 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local gene 59293 60578 715 + . gene_id 1 ; sequence SPP00000038_2.0 ; gene_orientation +
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local cds 59293 59464 . + .
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local exon 59293 59464 . + . insertions 0 ; deletions 0
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice5 59465 59466 . + . intron_id 1 ; splice_site "GT"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local intron 59465 59935 . + . intron_id 1
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice3 59934 59935 . + . intron_id 0 ; splice_site "AG"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local cds 59936 60053 . + .
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local exon 59936 60053 . + . insertions 0 ; deletions 0
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice5 60054 60055 . + . intron_id 2 ; splice_site "GT"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local intron 60054 60191 . + . intron_id 2
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice3 60190 60191 . + . intron_id 1 ; splice_site "AG"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local cds 60192 60291 . + .
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local exon 60192 60291 . + . insertions 0 ; deletions 0
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice5 60292 60293 . + . intron_id 3 ; splice_site "GT"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local intron 60292 60374 . + . intron_id 3
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local splice3 60373 60374 . + . intron_id 2 ; splice_site "AG"
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local cds 60375 60578 . + .
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local exon 60375 60578 . + . insertions 0 ; deletions 0
gi|397463514|gb|JH731987.1|:subseq(150000,100000) exonerate:protein2genome:local similarity 59293 60578 715 + . alignment_id 1 ; Query SPP00000038_2.0 ; Align 59293 24 171 ; Align 59938 82 114 ; Align 60193 121 99 ; Align 60375 154 204
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis