Find start end points: [23,59294][220,60577] Score 93792
Recovering alignment: Alignment recovered] Explicit read offe 94%

genewise output
Score 270.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397463514|gb|JH731987.1|:subseq(150000,100000) is longer than
allowed name block (15). Truncating

SPP00000038_2.0   24 KPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAY 
                     +P   +V+C   V GT+Y+YGALT++GEEY+ FK++AGK +LFVNVA Y 
                     RPAVFQVNCYSNVGGTVYDYGALTIDGEEYVPFKRYAGKMILFVNVATY 
gi|397463514|gb59293 ccggtcgattaagggagtgtggcaaggggtgctaatggaaactgaggat 
                     gccttatagagatggctaaagctctagaaatctagacgatttttatcca 
                     cgtccggcccctgtcactccgcccccgagccccggcggggcccccgcgc 


SPP00000038_2.0   73 XGLAAQYP                          LNALQEELKNFGVIV 
                     XGL  QY                           LNALQ EL  +G+++ 
                     XGLTMQYV          E:E[gaa]        LNALQSELGPYGLVI 
gi|397463514|gb59440 tgcaactgGGTAAGAG  Intron 1   CAGAAcagccagcgctgcga 
                     ggtctaat <1-----[59465:59935]-1>  tactagatgcagttt 
                     agccggct                          gtaaacaggccaccc 


SPP00000038_2.0   97 LAFPCNQFGKQEPGTNSEILLGL                           
                     L FP NQFGKQEPG N+EIL  L                           
                     LGFPSNQFGKQEPGQNAEILPAL           K:K[aaa]        
gi|397463514|gb59983 cgtctactgacgcgcaggaccgcAAGTGAGTA  Intron 2   CAGA 
                     tgtccaatgaaacgaacattcct  <2-----[60054:60191]-2>  
                     gcccccgtgaaaccgccgcttcg                           


SPP00000038_2.0  121 YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK                 
                     YV PG GF P+FQLF+KGDVNGEKEQKV+TFLK                 
                     YVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFLK                 
gi|397463514|gb60193 tgccgggtgcatcctcagggaggagcagtatca                 
                     atgcgggtccatattaagatagaaaaatactta                 
                     cccggacccctcgccggtcgcgggaggcccccg                 


SPP00000038_2.0  154                        NSCPPTSDLLGSSSQLFWEPMKVHDI 
                                            NSCPP  +  G   +LFWEP+K+HDI 
                                            NSCPPVVENFGDPKKLFWEPLKIHDI 
gi|397463514|gb60292 GTCCGTG  Intron 3   CAGattccgggatggcaacttgccaacga 
                     <0-----[60292:60374]-0>acgccttaatgacaattgactataat 
                                            ccctcggactaccggtcggcggcccc 


SPP00000038_2.0  180 RWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFNTH        
                     +WNFEKFLVGPDGVPVM W+H+A ++TVK+DI+EY+K  + H        
                     KWNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMKAQHPH        
gi|397463514|gb60453 atatgatcggcgggcgacttccgaagagaagaagtaagcccc        
                     agataatttgcagtcttggaagcatcctaaattaatacaaca        
                     ggccggcggggcgggggggcccccccgggcccggcggcgcac        


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|397463514|gb|JH731987.1|:subseq(150000,100000).pep
RPAVFQVNCYSNVGGTVYDYGALTIDGEEYVPFKRYAGKMILFVNVATYXGLTMQYVELN
ALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALKYVRPGGGFAPNFQLFQKGDVNGE
KEQKVYTFLKNSCPPVVENFGDPKKLFWEPLKIHDIKWNFEKFLVGPDGVPVMRWYHRAN
IATVKNDIMEYMKAQHPH
//
>gi|397463514|gb|JH731987.1|:subseq(150000,100000).[59293:60578].sp
CGCCCGGCTGTCTTCCAGGTGAACTGCTACAGCAATGTGGGTGGCACAGTCTATGACTAC
GGGGCCCTCACCATCGACGGGGAAGAGTACGTCCCCTTCAAGAGGTACGCGGGGAAGATG
ATCCTCTTCGTCAACGTGGCCACGTACTGAGGGCTCACCATGCAGTACGTTGAACTGAAT
GCACTACAAAGCGAACTGGGGCCCTACGGACTCGTCATCCTGGGCTTCCCCTCCAACCAG
TTTGGGAAACAAGAACCCGGCCAGAACGCCGAGATCCTTCCTGCCCTGAAATACGTCCGC
CCGGGGGGAGGCTTCGCCCCCAATTTCCAGCTCTTCCAGAAGGGTGACGTGAACGGGGAG
AAGGAACAGAAGGTCTACACCTTCCTCAAGAACTCCTGCCCTCCCGTGGTGGAAAACTTT
GGAGACCCCAAGAAGCTTTTCTGGGAGCCCCTGAAGATCCACGACATCAAGTGGAACTTC
GAGAAGTTCCTGGTGGGGCCGGACGGGGTGCCGGTGATGCGGTGGTACCACCGCGCCAAC
ATCGCCACGGTGAAGAACGACATCATGGAGTACATGAAGGCCCAGCACCCACAC
//
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	match	59293	60578	270.63	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	59293	59464	0.00	+	0	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	59465	59935	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	59936	60053	0.00	+	2	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	60054	60191	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	60192	60291	0.00	+	1	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	60292	60374	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	60375	60578	0.00	+	0	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
//