Command line: [exonerate -m p2g --showtargetgff -q ../Sel.human/GPX4.fa -t gi|397462837|gb|JH732664.1|subseq.fa]
Hostname: [ws101062]

C4 Alignment:
------------
         Query: SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human (Homo sapiens)
        Target: gi|397462837|gb|JH732664.1|:subseq(220000,100000) Alligator mississippiensis unplaced genomic scaffold scaffold-2624, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 465
   Query range: 15 -> 182
  Target range: 51877 -> 51372

    16 : CysGlyAlaLeuAlaAlaProGlyLeuAlaGlyThrMetCysAlaSerArgAspAspTrp :    35
         |||!.!! !! !:!!  !! !|||  !  !!.!  !  !||||||..!  !||| !!|||
         CysAlaGluTrpSerTrpHisGlyAlaLeuAlaGlyAlaCysAlaGlnValAspTyrTrp
 51877 : TGTGCGGAGTGGTCATGGCACGGTGCCTTGGCAGGAGCGTGTGCCCAGGTGGACTACTGG : 51820

    36 : ArgCysAlaArgSerMetHisGluPheSerAlaLysAspIleAspGlyHisMetValAsn :    55
          !!! !.!!!:!|||!!::!!|||!    !!.!|||||||||||||||  !   |||:::
         CysSerThrLysSerIleTyrGluSerHisValLysAspIleAspGlySerHisValSer
 51819 : TGCTCTACCAAATCCATCTATGAATCACATGTCAAGGACATCGATGGCAGCCATGTTTCA : 51760

    56 : LeuAspLysTyrArgGlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLys :    75
         |||!!:|||||| !!|||!:!!.!||||||:!!||||||:!!||||||:!!   ||||||
         LeuGluLysTyrTrpGlyTyrAlaCysIleIleThrAsnIleAlaSerLys***GlyLys
 51759 : CTGGAAAAGTACTGGGGTTATGCCTGCATCATCACAAATATAGCTTCAAAATGAGGCAAA : 51700

    76 : ThrGluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeu :    95
         |||!!::!!|||||||||||||||||||||:!!:!!|||! !!! .!!||| !  !!|||
         ThrAspIleAsnTyrThrGlnLeuValAspMetTyrAlaIle***ThrGluArgCysLeu
 51699 : ACCGATATAAACTACACTCAGCTTGTCGATATGTATGCCATATAGACGGAGAGGTGTTTA : 51640

    96 : ArgIleLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlySerAsnGluGlu :   115
         ||||||||||||||||||||||||||||||  !|||||| !!||||||!:!|||!  :!!
         ArgIleLeuAlaPheProCysAsnGlnPheLysLysGln***ProGlyAsnAsnAlaGln
 51639 : CGCATCCTGGCCTTCCCCTGCAACCAGTTCAAGAAACAGTAACCAGGGAACAATGCCCAG : 51580

   116 : IleLysGluPheAlaAlaGlyTyrAsnValLysPheAspMet----PheSerLysIleCy :   134
         ||||||!  |||!.!|||.!!|||...:!!|||!:!|||!!:####|||||||||! !  
         IleLysAlaPheValAlaSerTyrGlyMetLysTyrAspIle####PheSerLysThrAs
 51579 : ATCAAAGCCTTTGTTGCAAGCTATGGAATGAAGTATGATATACACATTCAGCAAGACTGA : 51519

   135 : sValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysIleGlnProLysGlyLy :   154
         !||| !!||||||:!!.!!!  |||||||||||||||:!!:!!   ||||||||||||!:
         pValTyrGlyAspAsnThrLeuProLeuTrpLysTrpLeuGlnGluGlnProLysGlyAr
 51518 : TGTCTACGGGGACAACACCCTGCCTTTGTGGAAGTGGCTGCAGGAGCAGCCCAAAGGCAG : 51459

   155 : sGlyIleLeuGlyAsnAlaIleLysTrpAsnPheThrLysPheLeuIleAspLysAsnGl :   174
         !|||! !|||||||||||||||||||||||||||||||||||||||||||||!!..!.||
         gGlyThrLeuGlyAsnAlaIleLysTrpAsnPheThrLysPheLeuIleAspAsnGluGl
 51458 : AGGCACCCTAGGAAATGCAATAAAATGGAACTTCACAAAGTTCCTTATTGACAATGAAGG : 51399

   175 : yCysValValLysArgTyrGlyPro :   182
         |! !:!!  ! ! !:! ! ||||||
         ySerLeuTrpAspGlnGluGlyPro
 51398 : ATCCCTATGGGATCAAGAAGGACCT : 51373

vulgar: SPP00000026_2.0 15 182 . gi|397462837|gb|JH732664.1|:subseq(220000,100000) 51877 51372 - 465 M 114 342 F 0 4 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|397462837|gb|JH732664.1|:subseq(220000,100000)	exonerate:protein2genome:local	gene	51373	51877	465	-	.	gene_id 1 ; sequence SPP00000026_2.0 ; gene_orientation .
gi|397462837|gb|JH732664.1|:subseq(220000,100000)	exonerate:protein2genome:local	cds	51373	51877	.	-	.	
gi|397462837|gb|JH732664.1|:subseq(220000,100000)	exonerate:protein2genome:local	exon	51373	51877	.	-	.	insertions 0 ; deletions 0 ; frameshifts 4
gi|397462837|gb|JH732664.1|:subseq(220000,100000)	exonerate:protein2genome:local	similarity	51373	51877	465	-	.	alignment_id 1 ; Query SPP00000026_2.0 ; Align 51878 16 342 ; Align 51532 130 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis