TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000021_2.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Human (Homo sapiens)
(226 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced ... 115 1e-24
gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced ... 101 3e-20
gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced ... 97 5e-19
gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced ... 57 6e-07
gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced ... 57 6e-07
gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced ... 46 1e-05
gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced ... 39 0.16
gi|397457772|gb|JH737729.1| Alligator mississippiensis unplaced ... 35 3.0
gi|397460449|gb|JH735052.1| Alligator mississippiensis unplaced ... 33 6.7
>gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1586, whole genome shotgun sequence
Length = 466719
Score = 115 bits (288), Expect = 1e-24
Identities = 64/126 (50%), Positives = 69/126 (54%), Gaps = 46/126 (36%)
Frame = +1
Query: 79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK------------------ 120
+ ELNALQ EL P+GLVILGFP NQFGKQEPG+N+EILP LK
Sbjct: 209929 HAELNALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALK*VPEPGQPGPGWGLPRTG 210108
Query: 121 ----------------------------YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152
YVRPGGGF PNFQLF+KGDVNGEKEQK YTFL
Sbjct: 210109 PYMGPAPTCTGRGWKGARHPLLPFHFFRYVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFL 210288
Query: 153 KNSCPP 158
K P
Sbjct: 210289 KVRAHP 210306
Score = 112 bits (281), Expect = 9e-24
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Frame = +3
Query: 91 PFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYT 150
P G + FP G +E GE +E L P G P+ + + G+ G +
Sbjct: 210201 PGGRLRPQFPALPEG*RERGEGTEGLHL-----PQGPCTPSSHV-QAGETGGHGGDACPS 210362
Query: 151 F-LKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209
F L+NSCPP E G +LFWEP+K+HDI+WNFEKFLVGPDG+P+MRW+HR ++ VK
Sbjct: 210363 FPLQNSCPPVVENFGDPKKLFWEPLKIHDIKWNFEKFLVGPDGVPVMRWYHRANIATVKN 210542
Query: 210 DILSYMRRQ 218
DI+ YM+ Q
Sbjct: 210543 DIMEYMKAQ 210569
Score = 83.2 bits (204), Expect = 7e-15
Identities = 34/52 (65%), Positives = 46/52 (88%)
Frame = +1
Query: 29 KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYI 80
+++C+ + GT+Y+YGALTIDGEEY+PFK+YAGK +LFVNVA+Y GLT QY+
Sbjct: 209308 QVNCYSNVGGTVYDYGALTIDGEEYVPFKRYAGKMILFVNVATY*GLTMQYV 209463
>gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-234, whole genome shotgun sequence
Length = 432364
Score = 101 bits (251), Expect = 3e-20
Identities = 50/108 (46%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Frame = +1
Query: 108 EPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSE----LL 163
E N EIL +LKYVRPG G+ PNF +FEK DVNG +TFLK + P + L+
Sbjct: 176959 ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLKEALPFPHDDPVALM 177138
Query: 164 GTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
+ W P+ +DI WNFEKFL+GPDGIP R+ R ++ DI
Sbjct: 177139 TNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDI 177282
Score = 58.5 bits (140), Expect = 2e-07
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 45 ALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQ 103
A + G E + G+ +L NVAS G T + + +LN LQE P GL++LGFPCNQ
Sbjct: 173979 ARPLGGGEPLALGSLLGRVLLVSNVASL*GTTARDFTQLNELQERYGPRGLLVLGFPCNQ 174158
Query: 104 FGKQEPG 110
FG Q PG
Sbjct: 174159 FGHQVPG 174179
>gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7762, whole genome shotgun sequence
Length = 1008463
Score = 97.1 bits (240), Expect = 5e-19
Identities = 54/123 (43%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Frame = -3
Query: 93 GLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152
G+ +L P QE N EIL +LKYVRPGGGF PNF LF+K VNG+ + +L
Sbjct: 890453 GVFVLSCPL-----QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYL 890289
Query: 153 KNSCPP----TSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVK 208
K P + LL L W P++ D+ WNFEKFLVGP+G P R+ + S+V+
Sbjct: 890288 KAHLPAPVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHVE 890109
Query: 209 MDI 211
DI
Sbjct: 890108 PDI 890100
Score = 59.7 bits (143), Expect = 9e-08
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = -3
Query: 36 ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGL 94
I+ + Y+ A+T+ GE+ + F + G+ VL NVAS G T + Y +LN LQ P L
Sbjct: 892058 IAKSFYDLSAITLQGEK-VDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARY-PRRL 891885
Query: 95 VILGFPCNQFGKQEPG 110
V+LGFPCNQFG Q G
Sbjct: 891884 VVLGFPCNQFGYQVSG 891837
>gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5685, whole genome shotgun sequence
Length = 643167
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -3
Query: 62 KYVLFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
K L VNVASY T + YI L L E P +L FPCNQFG+ EP + EI K
Sbjct: 563947 KASLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 563768
Query: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152
G + F +F K + G + + + FL
Sbjct: 563767 -----GNYGVTFPIFHKIKILGSEAEPAFKFL 563687
Score = 37.0 bits (84), Expect = 0.60
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 163 LGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 217
L SD + + K + RWNF K+LV P G + W + N+K ++ S +R+
Sbjct: 561719 LKLSDAILTDSSK-KEPRWNFWKYLVSPGGKVVKFWRPEEPIENIKPEVASLIRQ 561558
>gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4572, whole genome shotgun sequence
Length = 115602
Score = 57.0 bits (136), Expect = 6e-07
Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +2
Query: 65 LFVNVASYXGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR 123
L VNVAS G T Y L LQ +L P+ +L FPCNQFG+QEP + EI + R
Sbjct: 12230 LVVNVASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDTDKEI---ENFAR 12400
Query: 124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156
G F LF K V+G + +L C
Sbjct: 12401 KTYG--ATFPLFSKTAVSGAGANAAFKYLIGEC 12493
>gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2624, whole genome shotgun sequence
Length = 587981
Score = 46.2 bits (108), Expect(2) = 1e-05
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = -1
Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTG----QYIELNALQEELAPFGL 94
+IYE IDG ++ ++Y G + N+AS G T Q +++ A+ E L
Sbjct: 271805 SIYESHVKDIDGS-HVSLEKYWGYACIITNIASK*GKTDINYTQLVDMYAI*TERC---L 271638
Query: 95 VILGFPCNQFGKQEPGENSEI 115
IL FPCNQF KQ PG N++I
Sbjct: 271637 RILAFPCNQFKKQ*PGNNAQI 271575
Score = 25.8 bits (55), Expect(2) = 1e-05
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 135 FEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192
F K DV G+ + +L+ P LG + I+WNF KFL+ +G
Sbjct: 271531 FSKTDVYGDNTLPLWKWLQEQ-PKGRGTLGNA------------IKWNFTKFLIDNEG 271397
>gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8967, whole genome shotgun sequence
Length = 861763
Score = 38.9 bits (89), Expect = 0.16
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 61 GKYVLFVNVASYXGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPG 110
G+ + NVAS G T Y + + A GL IL FPCNQFGKQ G
Sbjct: 287896 GQVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQVGG 287744
>gi|397457772|gb|JH737729.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-10989, whole genome shotgun sequence
Length = 519662
Score = 34.7 bits (78), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 130 PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSEL 162
PNF +E G V G+K+ FY FL + PP ++
Sbjct: 58356 PNFSXYENGSVLGQKKTIFYPFLSSLLPPCCKM 58454
>gi|397460449|gb|JH735052.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6543, whole genome shotgun sequence
Length = 659660
Score = 33.5 bits (75), Expect = 6.7
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 98 GFPCNQFGKQEPGENSEIL 116
GFPCN+FG++ P ENS +L
Sbjct: 593387 GFPCNEFGQEGPWENSRLL 593443
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.320 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,311,608
Number of Sequences: 14644
Number of extensions: 8969429
Number of successful extensions: 31451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 29926
Number of HSP's gapped (non-prelim): 4385
length of query: 226
length of database: 724,747,747
effective HSP length: 125
effective length of query: 101
effective length of database: 722,917,247
effective search space: 73014641947
effective search space used: 73014641947
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)