Find start end points: [0,57519][217,60568] Score 110765
Recovering alignment: Alignment recovered Explicit read offfe 90%

genewise output
Score 319.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397463514|gb|JH731987.1|:subseq(150000,100000) is longer than
allowed name block (15). Truncating

SPP00000021_2.0    1 MARLLQASCLLSLLLAGFVSQSRGQEKSK                     
                     M   L AS +  L+LAG++  + GQEK K                     
                     MGGQLHASWIFPLVLAGLIQPNWGQEKDK                     
gi|397463514|gb57518 aggcccgttatctgtggcaccatgcgagaGTAAGGG  Intron 1    
                     tggataccgttctttcgttacaggaaaaa<0-----[57605:59310] 
                     ggcggtccgcccgtgtcgtggtggggacg                     


SPP00000021_2.0   30    MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                        ++C+  + GT+Y+YGALTIDGEEY+PFK+YAGK +LFVNVA+YXGL 
                        VNCYSNVGGTVYDYGALTIDGEEYVPFKRYAGKMILFVNVATYXGL 
gi|397463514|gb59308 CAGgattaagggagtgtggcaaggggtgctaatggaaactgaggattgc 
                     -0>tagagatggctaaagctctagaaatctagacgatttttatccaggt 
                        gcccctgtcactccgcccccgagccccggcggggcccccgcgcagc 


SPP00000021_2.0   76 TGQYI                          LNALQEELAPFGLVILGF 
                     T QY+                          LNALQ EL P+GLVILGF 
                     TMQYV          E:E[gaa]        LNALQSELGPYGLVILGF 
gi|397463514|gb59449 aactgGGTAAGAG  Intron 2   CAGAAcagccagcgctgcgacgt 
                     ctaat <1-----[59465:59935]-1>  tactagatgcagttttgt 
                     cggct                          gtaaacaggccacccgcc 


SPP00000021_2.0  100 PCNQFGKQEPGENSEILPTL                          YVR 
                     P NQFGKQEPG+N+EILP L                          YVR 
                     PSNQFGKQEPGQNAEILPAL           K:K[aaa]       YVR 
gi|397463514|gb59992 ctactgacgcgcaggaccgcAAGTGAGTA  Intron 3   CAGAtgc 
                     ccaatgaaacgaacattcct  <2-----[60054:60191]-2> atg 
                     cccgtgaaaccgccgcttcg                          ccc 


SPP00000021_2.0  124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGF PNFQLF+KGDVNGEKEQK YTFLK                    
                     PGGGFAPNFQLFQKGDVNGEKEQKVYTFLK                    
gi|397463514|gb60202 cgggtgcatcctcagggaggagcagtatca                    
                     cgggtccatattaagatagaaaaatactta                    
                     ggacccctcgccggtcgcgggaggcccccg                    


SPP00000021_2.0  154                        NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSCPP  E  G   +LFWEP+K+HDI 
                                            NSCPPVVENFGDPKKLFWEPLKIHDI 
gi|397463514|gb60292 GTCCGTG  Intron 4   CAGattccgggatggcaacttgccaacga 
                     <0-----[60292:60374]-0>acgccttaatgacaattgactataat 
                                            ccctcggactaccggtcggcggcccc 


SPP00000021_2.0  180 RWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQ           
                     +WNFEKFLVGPDG+P+MRW+HR  ++ VK DI+ YM+ Q           
                     KWNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMKAQ           
gi|397463514|gb60453 atatgatcggcgggcgacttccgaagagaagaagtaagc           
                     agataatttgcagtcttggaagcatcctaaattaataca           
                     ggccggcggggcgggggggcccccccgggcccggcggcg           


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|397463514|gb|JH731987.1|:subseq(150000,100000).pep
MGGQLHASWIFPLVLAGLIQPNWGQEKDKVNCYSNVGGTVYDYGALTIDGEEYVPFKRYA
GKMILFVNVATYXGLTMQYVELNALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALK
YVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFLKNSCPPVVENFGDPKKLFWEPLKIHDIK
WNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMKAQ
//
>gi|397463514|gb|JH731987.1|:subseq(150000,100000).[57518:60569].sp
ATGGGGGGCCAGCTGCATGCCTCCTGGATCTTCCCCTTGGTTTTGGCTGGCCTGATTCAG
CCGAATTGGGGGCAGGAGAAAGACAAGGTGAACTGCTACAGCAATGTGGGTGGCACAGTC
TATGACTACGGGGCCCTCACCATCGACGGGGAAGAGTACGTCCCCTTCAAGAGGTACGCG
GGGAAGATGATCCTCTTCGTCAACGTGGCCACGTACTGAGGGCTCACCATGCAGTACGTT
GAACTGAATGCACTACAAAGCGAACTGGGGCCCTACGGACTCGTCATCCTGGGCTTCCCC
TCCAACCAGTTTGGGAAACAAGAACCCGGCCAGAACGCCGAGATCCTTCCTGCCCTGAAA
TACGTCCGCCCGGGGGGAGGCTTCGCCCCCAATTTCCAGCTCTTCCAGAAGGGTGACGTG
AACGGGGAGAAGGAACAGAAGGTCTACACCTTCCTCAAGAACTCCTGCCCTCCCGTGGTG
GAAAACTTTGGAGACCCCAAGAAGCTTTTCTGGGAGCCCCTGAAGATCCACGACATCAAG
TGGAACTTCGAGAAGTTCCTGGTGGGGCCGGACGGGGTGCCGGTGATGCGGTGGTACCAC
CGCGCCAACATCGCCACGGTGAAGAACGACATCATGGAGTACATGAAGGCCCAG
//
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	match	57518	60569	319.60	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	57518	57604	0.00	+	0	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	57605	59310	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	59311	59464	0.00	+	0	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	59465	59935	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	59936	60053	0.00	+	2	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	60054	60191	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	60192	60291	0.00	+	1	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	intron	60292	60374	0.00	+	.	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
gi|397463514|gb|JH731987.1|:subseq(150000,100000)	GeneWise	cds	60375	60569	0.00	+	0	gi|397463514|gb|JH731987.1|:subseq(150000,100000)-genewise-prediction-1
//