TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Human (Homo sapiens)
(190 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced ... 188 8e-47
gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced ... 169 4e-41
gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced ... 63 4e-19
gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced ... 59 1e-07
gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced ... 52 1e-05
gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced ... 47 3e-04
gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced ... 45 0.001
gi|397459862|gb|JH735639.1| Alligator mississippiensis unplaced ... 36 0.69
>gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7762, whole genome shotgun sequence
Length = 1008463
Score = 188 bits (478), Expect = 8e-47
Identities = 82/116 (70%), Positives = 101/116 (87%)
Frame = -3
Query: 74 QENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSL 133
QENC NEEILNSLKYVRPGGG++P FTL QKC+VNGQ+ HPVFAYLK LP P D+P +L
Sbjct: 890426 QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPVDNPAAL 890247
Query: 134 MTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189
+TDP+ ++WSPV+R+D+ WNFEKFL+GPEGEPF+RYS F T ++EPDI+RLLK+A
Sbjct: 890246 LTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHVEPDIQRLLKLA 890079
Score = 125 bits (313), Expect = 1e-27
Identities = 61/74 (82%), Positives = 66/74 (89%)
Frame = -3
Query: 1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR 60
M IAKSFYDLSAI+L GEKVDFN FRGR VLIENVASL GTT RD+TQLN+LQ R+PRR
Sbjct: 892067 MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARYPRR 891888
Query: 61 LVVLGFPCNQFGHQ 74
LVVLGFPCNQFG+Q
Sbjct: 891887 LVVLGFPCNQFGYQ 891846
>gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-234, whole genome shotgun sequence
Length = 432364
Score = 169 bits (429), Expect = 4e-41
Identities = 73/113 (64%), Positives = 95/113 (84%)
Frame = +1
Query: 75 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
EN N+EIL SLKYVRPG GY+P FT+ +KC+VNG N HP+F +LK+ LP+P+DDP +LM
Sbjct: 176959 ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLKEALPFPHDDPVALM 177138
Query: 135 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
T+P+ IIWSPV R+D++WNFEKFLIGP+G PF+RYSR F TI I+ DI++LL+
Sbjct: 177139 TNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDIEKLLQ 177297
Score = 78.2 bits (191), Expect = 2e-13
Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Frame = +3
Query: 18 GEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQ 74
GE + + GR +L+ NVASL GTT RDFTQLNELQ R+ PR L+VLGFPCNQFGHQ
Sbjct: 173997 GEPLALGSLLGRVLLVSNVASL*GTTARDFTQLNELQERYGPRGLLVLGFPCNQFGHQ 174170
>gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1586, whole genome shotgun sequence
Length = 466719
Score = 63.2 bits (152), Expect(2) = 4e-19
Identities = 43/119 (36%), Positives = 51/119 (42%), Gaps = 47/119 (39%)
Frame = +1
Query: 49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK-------------------- 87
+LN LQ P LV+LGFP NQFG QE QN EIL +LK
Sbjct: 209935 ELNALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALK*VPEPGQPGPGWGLPRTGPY 210114
Query: 88 --------------------------YVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
YVRPGGG+ P F L QK +VNG+ E V+ +LK
Sbjct: 210115 MGPAPTCTGRGWKGARHPLLPFHFFRYVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFLK 210291
Score = 53.9 bits (128), Expect(2) = 4e-19
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 136 DPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
DPK + W P++ D+ WNFEKFL+GP+G P R+ ++ DI +K
Sbjct: 210408 DPKKLFWEPLKIHDIKWNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMK 210563
>gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5685, whole genome shotgun sequence
Length = 643167
Score = 58.9 bits (141), Expect = 1e-07
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = -3
Query: 29 RAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
+A L+ NVAS T +++ L EL F P VL FPCNQFG E ++EI + K
Sbjct: 563947 KASLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 563768
Query: 88 YVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
G Y TF + K ++ G P F +L K
Sbjct: 563767 -----GNYGVTFPIFHKIKILGSEAEPAFKFLVGK 563678
>gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4572, whole genome shotgun sequence
Length = 115602
Score = 52.0 bits (123), Expect = 1e-05
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 32 LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
L+ NVAS G T + L +LQ P VL FPCNQFG QE ++EI N +
Sbjct: 12230 LVVNVASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDTDKEIENFARKT- 12406
Query: 91 PGGGYQPTFTLVQKCEVNGQNEHPVFAYL 119
Y TF L K V+G + F YL
Sbjct: 12407 ----YGATFPLFSKTAVSGAGANAAFKYL 12481
>gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2624, whole genome shotgun sequence
Length = 587981
Score = 47.4 bits (111), Expect = 3e-04
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVL 64
KS Y+ +DG V + G A +I N+AS G T ++TQL ++ R L +L
Sbjct: 271808 KSIYESHVKDIDGSHVSLEKYWGYACIITNIASK*GKTDINYTQLVDMYAI*TERCLRIL 271629
Query: 65 GFPCNQFGHQENCQNEEI 82
FPCNQF Q N +I
Sbjct: 271628 AFPCNQFKKQ*PGNNAQI 271575
>gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8967, whole genome shotgun sequence
Length = 861763
Score = 45.1 bits (105), Expect = 0.001
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = -1
Query: 27 RGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQ 74
RG+ +I NVAS G T ++TQ ++ R+ R L +L FPCNQFG Q
Sbjct: 287899 RGQVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQ 287753
>gi|397459862|gb|JH735639.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7502, whole genome shotgun sequence
Length = 939111
Score = 36.2 bits (82), Expect = 0.69
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 52 ELQCRFPRRLVVLGFPCNQFG-------HQENCQNEEILNSLKYVRPGGGYQPTFTLVQK 104
E++C FP V+L +Q G + Q+ ++ + K + G+QP F +++K
Sbjct: 567980 EIKC-FPSYRVILSLSLSQMGTASIGEIKSNSIQHTQLSDGFKLQQANEGFQPVFYILEK 568156
Query: 105 CEVNGQNE 112
C +GQ E
Sbjct: 568157 CPYHGQTE 568180
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.323 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,038,884
Number of Sequences: 14644
Number of extensions: 8688302
Number of successful extensions: 27394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 305
Number of HSP's that attempted gapping in prelim test: 25672
Number of HSP's gapped (non-prelim): 4646
length of query: 190
length of database: 724,747,747
effective HSP length: 122
effective length of query: 68
effective length of database: 722,961,179
effective search space: 49161360172
effective search space used: 49161360172
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)