Find start end points: [0,57935][188,59921] Score 115204
Recovering alignment: Alignment recoveredExplicit read offffe 95%

genewise output
Score 332.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|397459705|gb|JH735796.1|:subseq(850000,100000) is longer than
allowed name block (15). Truncating

SPP00000019_2.0    1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQ 
                     M  IAKSFYDLSAI+L GEKVDFN FRGR VLIENVASLXGTT RD+TQ 
                     MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASLXGTTVRDYTQ 
gi|397459705|g-42067 aacagatttgcagaaccggaggtaatcgcggcagaggtctgaagcgtac 
                     tcctcactaatgctctagaatataatgggttttaatcctggcctgaaca 
                     ggcacgctcccctccgaggagtccccccggcgcgtgtacacggggtccg 


SPP00000019_2.0   50 LNELQCRFPRRLVVLGFPCNQFGHQ                       E 
                     LN+LQ R+PRRLVVLGFPCNQFG+Q                       E 
                     LNQLQARYPRRLVVLGFPCNQFGYQ                       E 
gi|397459705|g-41920 cacccgatccccggcgtctactgtcGTAAGTG  Intron 1   CAGg 
                     taatacgacggttttgtcgaatgaa<0-----[41845:40424]-0>a 
                     ccgggcgccgggtggcttccgtccg                       g 


SPP00000019_2.0   76 NCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 
                     NC NEEILNSLKYVRPGGG++P FTL QKC+VNGQ+ HPVFAYLK  LP 
                     NCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLP 
gi|397459705|g-40420 ataaggacaacatgccgggtgcatactcatcgagcgaccgtgtcagccc 
                     agcaaattagtaatgcgggtacatcttaagatagaacacttcatacatc 
                     ccccggcgccggtgcataccgccccctgacggtggcccaccccggccat 


SPP00000019_2.0  125 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF 
                      P D+P +L+TDP+ ++WSPV+R+D+ WNFEKFL+GPEGEPF+RYS  F 
                     APVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKF 
gi|397459705|g-40273 gcggacggccagcctcgtacgccggcatatgatcggcgggctactacat 
                     cctaacccttcacgtttggctagcatcgataatttgcagactagagcat 
                     ccgtcccctgacggcgggccgacacgcgctggcgggcgcgacgccccgc 


SPP00000019_2.0  174 PTINIEPDIKRLLKVA                                  
                      T ++EPDI+RLLK+A                                  
                     QTSHVEPDIQRLLKLA                                  
gi|397459705|g-40126 caacggcgaccccacg                                  
                     acgatacatagttatc                                  
                     gcccggtccgcccgtg                                  


//
>gi|397459705|gb|JH735796.1|:subseq(850000,100000).pep
MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASLXGTTVRDYTQLNQLQARYPRR
LVVLGFPCNQFGYQENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLK
AHLPAPVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHVEP
DIQRLLKLA
//
>gi|397459705|gb|JH735796.1|:subseq(850000,100000).[42067:40077].sp
ATGACGCCCATAGCCAAGTCCTTTTACGACCTCAGCGCTATCACCCTGCAAGGGGAGAAA
GTGGATTTCAACAACTTCCGCGGCCGGGTGGTCCTGATCGAGAATGTGGCTTCACTCTGA
GGCACGACGGTGCGGGATTACACCCAGCTCAACCAGCTGCAGGCCAGGTACCCCCGGCGG
CTGGTTGTGCTGGGCTTTCCTTGCAACCAGTTTGGCTACCAGGAGAACTGCACCAACGAG
GAGATCCTGAACAGCCTGAAGTATGTGCGCCCAGGTGGAGGCTTCGAGCCCAACTTCACC
CTCTTTCAGAAATGCCAGGTGAATGGGCAGGACACCCACCCAGTCTTCGCCTACCTGAAG
GCCCACCTACCTGCCCCCGTGGATAACCCCGCCGCCCTTCTGACAGACCCGCGGTTCCTG
GTGTGGAGCCCCGTGCAACGCGCAGACCTGACCTGGAACTTTGAGAAGTTCCTGGTGGGG
CCCGAGGGCGAGCCATTCAAGCGCTACAGCCCCAAGTTCCAGACCAGCCACGTGGAGCCT
GACATCCAGCGCCTCCTCAAGCTTGCG
//
gi|397459705|gb|JH735796.1|:subseq(850000,100000)	GeneWise	match	42067	40079	332.41	-	.	gi|397459705|gb|JH735796.1|:subseq(850000,100000)-genewise-prediction-1
gi|397459705|gb|JH735796.1|:subseq(850000,100000)	GeneWise	cds	42067	41846	0.00	-	0	gi|397459705|gb|JH735796.1|:subseq(850000,100000)-genewise-prediction-1
gi|397459705|gb|JH735796.1|:subseq(850000,100000)	GeneWise	intron	41845	40424	0.00	-	.	gi|397459705|gb|JH735796.1|:subseq(850000,100000)-genewise-prediction-1
gi|397459705|gb|JH735796.1|:subseq(850000,100000)	GeneWise	cds	40423	40079	0.00	-	0	gi|397459705|gb|JH735796.1|:subseq(850000,100000)-genewise-prediction-1
//