TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Human (Homo sapiens)
(203 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced ... 189 4e-47
gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced ... 171 1e-41
gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced ... 74 1e-23
gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced ... 67 3e-10
gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced ... 67 6e-10
gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced ... 53 8e-06
gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced ... 43 8e-05
>gi|397464367|gb|JH731134.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-234, whole genome shotgun sequence
Length = 432364
Score = 189 bits (481), Expect = 4e-47
Identities = 86/119 (72%), Positives = 100/119 (84%)
Frame = +1
Query: 85 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 144
ENA N+EIL SLKYVRPG G+EPNF +FEKC+VNGA AHPLF FL+EALP P DD ALM
Sbjct: 176959 ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLKEALPFPHDDPVALM 177138
Query: 145 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 203
T+P+ I WSPVCRND++WNFEKFL+GPDG+P +RYSRRF+TI I+ DIE LL Q PS A
Sbjct: 177139 TNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKIQDDIEKLLQQIPSNA 177315
Score = 108 bits (270), Expect = 1e-22
Identities = 50/64 (78%), Positives = 57/64 (89%)
Frame = +3
Query: 21 ARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 80
ARPL GGEP++LGSL G+VLL+ NVASL GTT RD+TQ+NELQ R GPRGL+VLGFPCNQ
Sbjct: 173979 ARPLGGGEPLALGSLLGRVLLVSNVASL*GTTARDFTQLNELQERYGPRGLLVLGFPCNQ 174158
Query: 81 FGHQ 84
FGHQ
Sbjct: 174159 FGHQ 174170
>gi|397459705|gb|JH735796.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-7762, whole genome shotgun sequence
Length = 1008463
Score = 171 bits (434), Expect = 1e-41
Identities = 80/128 (62%), Positives = 97/128 (75%)
Frame = -3
Query: 69 RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAF 128
+G+ VL P QEN NEEILNSLKYVRPGGGFEPNF LF+KC+VNG HP+FA+
Sbjct: 890456 QGVFVLSCPL-----QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAY 890292
Query: 129 LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDI 188
L+ LPAP D+ AL+TDP+ + WSPV R D+ WNFEKFLVGP+G P +RYS +FQT +
Sbjct: 890291 LKAHLPAPVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHV 890112
Query: 189 EPDIEALL 196
EPDI+ LL
Sbjct: 890111 EPDIQRLL 890088
Score = 85.5 bits (210), Expect = 1e-15
Identities = 47/71 (66%), Positives = 54/71 (76%)
Frame = -3
Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
+S Y SA L G E V + RG+V+LIENVASL GTTVRDYTQ+N+LQ R PR LVV
Sbjct: 892052 KSFYDLSAITLQG-EKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARY-PRRLVV 891879
Query: 74 LGFPCNQFGHQ 84
LGFPCNQFG+Q
Sbjct: 891878 LGFPCNQFGYQ 891846
>gi|397463514|gb|JH731987.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1586, whole genome shotgun sequence
Length = 466719
Score = 74.3 bits (181), Expect(2) = 1e-23
Identities = 44/121 (36%), Positives = 55/121 (45%), Gaps = 46/121 (38%)
Frame = +1
Query: 56 YTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK------------------ 97
+ ++N LQ LGP GLV+LGFP NQFG QE +N EIL +LK
Sbjct: 209929 HAELNALQSELGPYGLVILGFPSNQFGKQEPGQNAEILPALK*VPEPGQPGPGWGLPRTG 210108
Query: 98 ----------------------------YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
YVRPGGGF PNF LF+K +VNG ++ FL
Sbjct: 210109 PYMGPAPTCTGRGWKGARHPLLPFHFFRYVRPGGGFAPNFQLFQKGDVNGEKEQKVYTFL 210288
Query: 130 R 130
+
Sbjct: 210289 K 210291
Score = 58.5 bits (140), Expect(2) = 1e-23
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +3
Query: 146 DPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI-EALLSQGP 200
DPK + W P+ +D+ WNFEKFLVGPDGVP+ R+ R ++ DI E + +Q P
Sbjct: 210408 DPKKLFWEPLKIHDIKWNFEKFLVGPDGVPVMRWYHRANIATVKNDIMEYMKAQHP 210575
>gi|397461646|gb|JH733855.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-4572, whole genome shotgun sequence
Length = 115602
Score = 67.4 bits (163), Expect = 3e-10
Identities = 40/92 (43%), Positives = 51/92 (55%)
Frame = +2
Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
+V L+ NVAS G T Y + +LQR LGP VL FPCNQFG QE ++EI N +
Sbjct: 12221 QVSLVVNVASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDTDKEIENFAR 12400
Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
+ F LF K V+GAGA+ F +L
Sbjct: 12401 KT-----YGATFPLFSKTAVSGAGANAAFKYL 12481
>gi|397460984|gb|JH734517.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-5685, whole genome shotgun sequence
Length = 643167
Score = 66.6 bits (161), Expect = 6e-10
Identities = 36/92 (39%), Positives = 49/92 (53%)
Frame = -3
Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
K L+ NVAS T ++Y + EL R GP VL FPCNQFG E + ++EI + K
Sbjct: 563947 KASLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 563768
Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
G + F +F K ++ G+ A P F FL
Sbjct: 563767 -----GNYGVTFPIFHKIKILGSEAEPAFKFL 563687
>gi|397458980|gb|JH736521.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8967, whole genome shotgun sequence
Length = 861763
Score = 52.8 bits (125), Expect = 8e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -1
Query: 31 SLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84
SL RG+V +I NVAS G T +YTQ ++ R RGL +L FPCNQFG Q
Sbjct: 287914 SLPLPRGQVCIITNVASK*GKTDVNYTQFVDMYARYAERGLRILAFPCNQFGKQ 287753
>gi|397462837|gb|JH732664.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-2624, whole genome shotgun sequence
Length = 587981
Score = 43.1 bits (100), Expect(2) = 8e-05
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = -1
Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
+S+Y + + G VSL G +I N+AS G T +YTQ+ ++ R L +
Sbjct: 271808 KSIYESHVKDIDGSH-VSLEKYWGYACIITNIASK*GKTDINYTQLVDMYAI*TERCLRI 271632
Query: 74 LGFPCNQFGHQENAKNEEI 92
L FPCNQF Q N +I
Sbjct: 271631 LAFPCNQFKKQ*PGNNAQI 271575
Score = 25.4 bits (54), Expect(2) = 8e-05
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = -2
Query: 112 FEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP 171
F K +V G PL+ +L+E P T N + WNF KFL+
Sbjct: 271531 FSKTDVYGDNTLPLWKWLQEQ---PKGRGTL--------------GNAIKWNFTKFLIDN 271403
Query: 172 DG 173
+G
Sbjct: 271402 EG 271397
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,827,930
Number of Sequences: 14644
Number of extensions: 8696968
Number of successful extensions: 30962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 28988
Number of HSP's gapped (non-prelim): 5254
length of query: 203
length of database: 724,747,747
effective HSP length: 123
effective length of query: 80
effective length of database: 722,946,535
effective search space: 57835722800
effective search space used: 57835722800
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)