Find start end points: [8,53944][200,57308] Score 107749
Recovering alignment: Alignment recovered Explicit read offfe 68%

genewise output
Score 310.90 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397464367|gb|JH731134.1|:subseq(120000,100000) is longer than
allowed name block (15). Truncating

SPP00000017_2.0    9 AAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYT 
                     +A A + +  + ARPL GGEP++LGSL G+VLL+ NVASLXGTT RD+T 
                     SALAGRGLAGLEARPLGGGEPLALGSLLGRVLLVSNVASLXGTTARDFT 
gi|397464367|gb53943 tgcggcgcggcggcccggggccgcgtccgcgccgtaggtctgaagcgta 
                     cctcgggtcgtacgctgggactctgcttggttttcatcctggcccgatc 
                     gggcgcgcggggggggcgggggggcgggcggcgcccgtgcaccgccccg 


SPP00000017_2.0   58 QMNELQRRLGPRGLVVLGFPCNQFGHQ                       
                     Q+NELQ R GPRGL+VLGFPCNQFGHQ                       
                     QLNELQERYGPRGLLVLGFPCNQFGHQ                       
gi|397464367|gb54090 ccagccgctgccgccgcgtctactgccGTACCGG  Intron 1      
                     ataataagagcggttttgtcgaatgaa<0-----[54171:56958]   
                     gccgggggcgtcggccgcccccgcacg                       


SPP00000017_2.0   85    ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 
                        ENA N+EIL SLKYVRPG G+EPNF +FEKC+VNGA AHPLF FL+ 
                        ENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTFLK 
gi|397464367|gb56956 TAGgagaaggaccttatgccgagtgcataatgatggaggagccctatta 
                     -0>aaccaaatttctaatgcgagaacatcttaagatagcacacttctta 
                        gtccttgtgtcagtcttctttgcttcgtgaccgtaattcatcatga 


SPP00000017_2.0  131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRY 
                     EALP P DD  ALMT+P+ I WSPVCRND++WNFEKFL+GPDG+P +RY 
                     EALPFPHDDPVALMTNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRY 
gi|397464367|gb57097 ggtctccggcggcaaacctaattcgtaagattatgatcagcggactact 
                     actctcaaactcttcacaattgcctggaatcgataatttgcagtctaga 
                     gagtcatttagaggctagcccgtatcgccccgctagcctcttaatcgtc 


SPP00000017_2.0  180 SRRFQTIDIEPDIEALLSQGPS                            
                     SRRF+TI I+ DIE LL Q PS                            
                     SRRFETIKIQDDIEKLLQQIPS                            
gi|397464367|gb57244 aactgaaaacggagaccccact                            
                     gggtactataaataattaatcc                            
                     cactatcgcatttagctggtta                            


//
>gi|397464367|gb|JH731134.1|:subseq(120000,100000).pep
SALAGRGLAGLEARPLGGGEPLALGSLLGRVLLVSNVASLXGTTARDFTQLNELQERYGP
RGLLVLGFPCNQFGHQENATNDEILLSLKYVRPGNGYEPNFTMFEKCDVNGANAHPLFTF
LKEALPFPHDDPVALMTNPQYIIWSPVCRNDISWNFEKFLIGPDGIPFKRYSRRFETIKI
QDDIEKLLQQIPS
//
>gi|397464367|gb|JH731134.1|:subseq(120000,100000).[53943:57309].sp
TCGGCGCTGGCCGGGCGCGGGCTCGCGGGGCTGGAGGCGCGGCCGCTGGGCGGGGGGGAG
CCGCTGGCGCTGGGCTCGCTGCTGGGCCGGGTGCTCCTGGTCTCCAACGTGGCTTCGCTC
TGAGGCACCACGGCCCGCGACTTCACGCAGCTCAACGAGCTGCAGGAGCGGTACGGGCCT
CGCGGGCTGCTCGTCCTGGGCTTCCCCTGCAACCAGTTCGGACACCAGGAGAATGCCACC
AATGATGAGATTCTGCTTTCCTTAAAGTATGTCCGTCCTGGCAATGGTTATGAGCCCAAT
TTTACCATGTTTGAGAAATGCGACGTGAATGGAGCAAATGCTCACCCACTTTTCACATTT
TTGAAAGAGGCATTGCCTTTCCCACATGATGATCCAGTGGCACTGATGACCAATCCACAG
TACATCATCTGGTCTCCAGTTTGCAGGAACGACATCTCCTGGAACTTTGAAAAGTTCCTC
ATTGGCCCTGATGGAATACCTTTCAAGCGTTACAGCAGACGCTTTGAAACTATCAAGATC
CAAGATGATATTGAAAAGCTCCTTCAGCAGATTCCTTCA
//
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	match	53943	57309	310.90	+	.	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	cds	53943	54170	0.00	+	0	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	intron	54171	56958	0.00	+	.	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	cds	56959	57309	0.00	+	0	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
//
Find start end points: [63,42208][83,42268] Score 11064
Recovering alignment: Alignment recovered] Explicit read off

genewise output
Score 31.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397464367|gb|JH731134.1|:subseq(120000,100000) is longer than
allowed name block (15). Truncating

SPP00000017_2.0   64 RRLGPRGLVVLGFPCNQFGHQ                             
                     R  GP  L +LGFPCNQF +Q                             
                     RGCGPCRLFILGFPCNQFRYQ                             
gi|397464367|g-57794 agtgctactacgtctactatc                             
                     ggggcggttttgtcgaatgaa                             
                     gctatcggccgcccccgcgtg                             


//
>gi|397464367|gb|JH731134.1|:subseq(120000,100000).pep
RGCGPCRLFILGFPCNQFRYQ
//
>gi|397464367|gb|JH731134.1|:subseq(120000,100000).[57794:57730].sp
AGGGGCTGTGGACCTTGCAGGCTGTTCATCCTGGGCTTCCCCTGCAACCAGTTCAGGTAT
CAG
//
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	match	57794	57732	31.92	-	.	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
gi|397464367|gb|JH731134.1|:subseq(120000,100000)	GeneWise	cds	57794	57732	0.00	-	0	gi|397464367|gb|JH731134.1|:subseq(120000,100000)-genewise-prediction-1
//