genewise output
Score 934.38 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
SPP00000144_2.0 13 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP
LGHIDSGKTALARALST STAAFD+ PQSR RGITLDLGFSC+ LP
LGHIDSGKTALARALSTAGSTAAFDRAPQSRARGITLDLGFSCLCTALP
gi|397462090|-245320 cgcagagaagcgcgcaaggtaggtgcgccacgcgaacgcgtttctagcc
tgataggacctcgctgccgcccctagccaggcggtctatgtcgtgcctc
gccccccggggcagccccctccccccgggcccccccgcgccgccccggc
SPP00000144_2.0 62 ARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIG
RL P P PG LQ TLVDCPGHASLIRTIIG
PRL---------GPGPGPGPGHGHLQFTLVDCPGHASLIRTIIG
gi|397462090|-245173 ccc gcgcgcgcgcgccctacggtcgcgtcacaaag
cgt gcgcgcgcgagatatcttagcgaccttgcttg
gcc ccccccccccgcggcgggcccccccccgcccc
SPP00000144_2.0 106 AQIIDLMMLVIDVTKGMQTQSAE
AQIIDLMMLVIDVTKGMQTQSAE
G:G[ggt] AQIIDLMMLVIDVTKGMQTQSAE
gi|397462090|-245068 GGTGAGGG Intron 1 CAGGTgcaagtaacgaggaagacactgg
<1-----[245067:19124-1> cattattttttatcagtacacca
cgtttgggtaatgaagggtgaag
SPP00000144_2.0 130 CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENT
CLVIGQIACQK+VVVLNKIDLLPEGKRQAAI+KMTKKMQKTLENT
CLVIGQIACQKMVVVLNKIDLLPEGKRQAAIEKMTKKMQKTLENT
gi|397462090|-191172 ttgagcagtcaagggcaaagcccggaacggagaaaaaacaatgaa
gtttgatcgaatttttaatattcagagacctaatcaataactaac
cagtaattcgggaatgcaatctagggagtctgggcgagagcgata
SPP00000144_2.0 175 FRGAPIIPVAAKPGGPEAPETEA
F G PI+ VAAKPGGPEAPET
K:K[aag] FHGCPIVAVAAKPGGPEAPETVN
gi|397462090|-191037 AAGTAAGTT Intron 2 CAGGtcgtcagggggacggcggcgaga
<2-----[191035:18368-2> taggcttctccacggcaccacta
ctgttttggatattaaacagtgt
SPP00000144_2.0 199 PQGIPELIE LLTSQISIPTRDPSGPF
P G+ ELIE +L SQ +P+RDPSGPF
PLGVSELIE VLKSQAYLPSRDPSGPF
gi|397462090|-183610 ccggtgtagGTACATG Intron 3 CAGgcatcgtcctagctgct
ctgtcatta<0-----[183583:18022-0>ttacacatccgaccgct
aatttaatg cggtgtcgaaatctacc
SPP00000144_2.0 225 LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK
LM+VDHCFSIKGQGTVMTGTIL+GS+SLGD+VEIPALK
LMAVDHCFSIKGQGTVMTGTILTGSVSLGDNVEIPALK
gi|397462090|-180170 cagggctttaagcgagaagaacagtgacggaggacgca
ttctaagtctagagcttcgcttcgctgtgaatatccta
tgattctctcgtacaggagttttcttcatttggtccgg
SPP00000144_2.0 263 VVKKVKSMQMFHMPITSAMQGDRLGI
V KKVKSMQMFH P+T AMQGDR+GI
VSKKVKSMQMFHTPVTYAMQGDRVGI
gi|397462090|-180056 GTGAGTG Intron 4 CAGgtaagatacatcacgatgacggagga
<0-----[180056:13702-0>tcaatactattacctcactagagtgt
gagacgcgggcttcgtccgggcgacc
SPP00000144_2.0 289 CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI
CVTQFDPKLLERGL+C PESL T+HAA+IS++KI YFRG LQTKAKFHI
CVTQFDPKLLERGLICTPESLQTIHAAIISLKKIQYFRGALQTKAKFHI
gi|397462090|-136941 tgactgcaccgcgcatacgtccaacggaatcaaacttcggccaagatca
gtcatacattaggttgccactactaccttctaataatggctacacatat
tgcgttcggaagtcctcaatcgcattctccggatgttatgggcacgttc
SPP00000144_2.0 338 TVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP
TVGHETVMGR+MFF PAP +F++EP+ ++F+F ++YL+QE+YLSKD
TVGHETVMGRVMFFGPAPADFNKEPLDNAFDFERDYLYQEEYLSKD-SK
gi|397462090|-136794 aggcgagagcgattgcgcggtaagccgagtgtgagtctcggtttag ta
ctgaacttggttttgccccataaactaactatagaataaaaatcaa ca
attcaatgaaagcctacttcccagcgctctttaatcttaaatgcgt gg
SPP00000144_2.0 387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA
A +N + D+ Q P+QQWAL+EFEKPVTCPRLCLVIGS+LD
ASDENKDNDQTGEQL-----PKQQWALLEFEKPVTCPRLCLVIGSKLDT
gi|397462090|-136650 gtggaagagcaggcc cacctgtcgtgacgatccctcgagtacga
ccaaaaaaaacgaat caaagcttataactcgcgtgtttgcatac
tttacgttcgaaggc ggaggcaggtaaactttacttatgaagtt
SPP00000144_2.0 436 DIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER
DIH NTCRLAFHG+LL GLED+NY ++FLP+LKVYKLKHK G VER
DIHANTCRLAFHGVLLQGLEDKNYTETFLPKLKVYKLKHKEGQVER
gi|397462090|-136518 gacgaatatgtcggtccgcggaatagatccacagtacacaggcgga
atacacggtctagtttagtaaaaacacttcatataataaaagatag
tttacccggactgagtacaatactagtctaggagcaggcaatagag
SPP00000144_2.0 482 AMDDYSVIGRSLFKKETNIQLFVGLK
+DDYSVIGRSLFKKETNIQ+FVGLK
VIDDYSVIGRSLFKKETNIQIFVGLK
gi|397462090|-136380 GTAAGCT Intron 5 CAGgaggtagagctctaagaaacatggca
<0-----[136380:11626-0>ttaaagttggcttaaacatatttgta
gactccgcttggtagacccgttggga
SPP00000144_2.0 508 VHLSTGELGIIDSAFGQSGKFKIHIP
V LSTGE GII+ FGQSGKFKI IP
VKLSTGEDGIIEGGFGQSGKFKIRIP G:D[gat]
gi|397462090|-116185 gactaggggaagggtgcagataacacGGTAAGCA Intron 6
tatccgaagttaggtgaggatatgtc <1-----[116106:50182]
cgataagtcaaatctggttatacaca
SPP00000144_2.0 534 GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLS
GL P++K +LT A KK++RAG+G+A ++++S ++E +Q V +S
GLKPDTKALLTVASKKKSRAGKGDAAKEDDST-KAESAQPVAIS
gi|397462090|g-50184 TAGATgcacgaagccaggtaaataggaggggagggaa aggtgccggaa
-1> gtacacacttctccaaacgcgagaccaaaagc acaccactctg
gcgacagatgttctggacaagagtacagtccc atgacgttccc
SPP00000144_2.0 579 LTFKRYVFDTHKRMVQS
L FKRYVFDT K+M+QS
LLFKRYVFDTQKKMIQS
gi|397462090|g-50050 cctaatgtgacaaaact
tttagattacaaattac
tctaacctcgggagtgt
//
Making a G in phase 1 intron
Making a K in phase 2 intron
Making a D in phase 1 intron
>gi|397462090|gb|JH733411.1|:subseq(110221,245320).pep
LGHIDSGKTALARALSTAGSTAAFDRAPQSRARGITLDLGFSCLCTALPPRLGPGPGPGP
GHGHLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKM
VVVLNKIDLLPEGKRQAAIEKMTKKMQKTLENTKFHGCPIVAVAAKPGGPEAPETVNPLG
VSELIEVLKSQAYLPSRDPSGPFLMAVDHCFSIKGQGTVMTGTILTGSVSLGDNVEIPAL
KVSKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLERGLICTPESLQTIHAAIISLKK
IQYFRGALQTKAKFHITVGHETVMGRVMFFGPAPADFNKEPLDNAFDFERDYLYQEEYLS
KDSKASDENKDNDQTGEQLPKQQWALLEFEKPVTCPRLCLVIGSKLDTDIHANTCRLAFH
GVLLQGLEDKNYTETFLPKLKVYKLKHKEGQVERVIDDYSVIGRSLFKKETNIQIFVGLK
VKLSTGEDGIIEGGFGQSGKFKIRIPDGLKPDTKALLTVASKKKSRAGKGDAAKEDDSTK
AESAQPVAISLLFKRYVFDTQKKMIQS
//
>gi|397462090|gb|JH733411.1|:subseq(110221,245320).[245320:49998].sp
CTGGGCCACATCGACAGCGGCAAGACGGCGCTGGCCCGAGCGCTCAGCACCGCCGGCTCT
ACCGCCGCCTTCGACCGCGCGCCGCAGAGCCGCGCCCGCGGCATCACCCTGGACCTGGGC
TTCTCGTGCCTCTGCACCGCGCTGCCCCCGCGCCTCGGCCCCGGCCCCGGCCCCGGCCCC
GGCCACGGGCACCTGCAGTTCACGCTGGTGGACTGCCCCGGCCACGCCTCCCTCATCCGG
ACCATCATCGGCGGTGCCCAGATTATTGATTTGATGATGCTTGTAATAGATGTGACAAAA
GGGATGCAGACTCAGTCAGCAGAGTGCTTAGTGATTGGACAAATTGCTTGCCAGAAGATG
GTAGTAGTTCTGAACAAAATAGATCTCCTTCCAGAGGGGAAGAGACAGGCTGCCATTGAG
AAGATGACCAAGAAAATGCAAAAGACCTTGGAAAATACAAAGTTCCATGGGTGTCCTATT
GTTGCGGTGGCAGCTAAACCTGGTGGACCAGAAGCCCCAGAGACTGTGAATCCACTAGGT
GTTTCTGAATTAATTGAGGTCCTGAAGTCTCAGGCTTACCTGCCATCAAGAGATCCCTCT
GGACCCTTCCTTATGGCAGTTGATCACTGTTTCTCTATCAAGGGTCAAGGCACAGTGATG
ACAGGGACTATTCTTACTGGCTCTGTTAGCCTAGGTGATAATGTGGAGATTCCCGCCCTG
AAGGTGTCAAAGAAAGTCAAGTCCATGCAGATGTTCCATACTCCCGTGACTTACGCCATG
CAGGGGGACAGGGTAGGCATCTGTGTGACCCAGTTTGATCCCAAGCTGCTAGAACGGGGT
CTCATCTGTACCCCAGAATCTCTCCAGACCATACATGCTGCCATTATCTCCCTGAAGAAA
ATTCAGTATTTTCGAGGTGCGCTGCAGACCAAAGCCAAGTTTCATATCACAGTTGGTCAC
GAAACAGTTATGGGACGAGTAATGTTCTTCGGTCCAGCCCCTGCTGACTTCAACAAAGAG
CCCCTGGACAATGCCTTTGATTTTGAAAGAGATTACCTTTATCAAGAAGAATATTTGTCC
AAGGATTCGAAGGCTTCTGATGAAAACAAGGATAATGACCAGACAGGAGAGCAGCTCCCG
AAGCAACAGTGGGCCTTACTGGAGTTTGAAAAACCAGTCACTTGTCCTCGACTCTGTCTT
GTAATTGGGTCAAAACTGGATACTGATATTCATGCAAACACCTGCAGGTTGGCATTCCAT
GGGGTATTGCTTCAAGGCCTAGAAGATAAAAACTATACAGAGACTTTCCTTCCAAAGCTG
AAAGTGTACAAACTGAAGCACAAAGAAGGTCAAGTGGAAAGGGTGATAGACGATTACAGC
GTGATCGGTCGTTCGCTGTTTAAAAAGGAAACCAACATCCAGATTTTTGTGGGGCTGAAA
GTCAAGCTATCTACAGGAGAGGATGGCATAATAGAAGGTGGCTTTGGGCAGAGTGGTAAA
TTTAAAATCCGAATCCCAGATGGGCTCAAGCCAGACACAAAGGCACTTCTGACTGTTGCC
TCTAAGAAGAAATCCAGAGCAGGGAAAGGGGATGCAGCCAAAGAGGATGACAGCACCAAA
GCTGAGTCAGCCCAGCCTGTTGCCATCAGCCTTCTCTTTAAAAGATACGTCTTTGACACG
CAGAAGAAAATGATTCAGTCT
//
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise match 245320 50000 946.36 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 245320 245068 0.00 - 0 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 245067 191244 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 191243 191036 0.00 - 2 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 191035 183681 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 183680 183584 0.00 - 1 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 183583 180222 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 180221 180057 0.00 - 0 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 180056 137020 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 137019 136381 0.00 - 0 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 136380 116264 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 116263 116107 0.00 - 0 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise intron 116106 50182 0.00 - . gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
gi|397462090|gb|JH733411.1|:subseq(110221,245320) GeneWise cds 50181 50000 0.00 - 2 gi|397462090|gb|JH733411.1|:subseq(110221,245320)-genewise-prediction-1
//