TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Human (Homo sapiens)
(278 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397456552|gb|JH738948.1| Alligator mississippiensis unplaced ... 333 6e-90
gi|397463745|gb|JH731756.1| Alligator mississippiensis unplaced ... 142 2e-32
gi|397464218|gb|JH731283.1| Alligator mississippiensis unplaced ... 62 3e-08
gi|397460703|gb|JH734798.1| Alligator mississippiensis unplaced ... 38 0.40
gi|397456056|gb|JH739444.1| Alligator mississippiensis unplaced ... 37 0.90
gi|397459189|gb|JH736312.1| Alligator mississippiensis unplaced ... 35 3.4
gi|397462156|gb|JH733345.1| Alligator mississippiensis unplaced ... 35 4.5
gi|397457120|gb|JH738380.1| Alligator mississippiensis unplaced ... 34 5.8
gi|397458166|gb|JH737335.1| Alligator mississippiensis unplaced ... 34 5.8
gi|397460541|gb|JH734960.1| Alligator mississippiensis unplaced ... 34 5.8
gi|397457484|gb|JH738017.1| Alligator mississippiensis unplaced ... 33 9.9
>gi|397456552|gb|JH738948.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-13070, whole genome shotgun sequence
Length = 167594
Score = 333 bits (853), Expect = 6e-90
Identities = 159/259 (61%), Positives = 198/259 (76%)
Frame = +2
Query: 14 AQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPP 73
AQ A+CL+LFPRFL +A MLWLLDFLCIRK L G P + GE PPDDPP
Sbjct: 61028 AQAAACLLLFPRFLLSAAMLWLLDFLCIRKKVLA----GGPAAAAAAAAAGEP-PPDDPP 61192
Query: 74 ICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNR 133
+CVSD NRL T SLKAVWHG KLD FK AH G APN EV+ DG + +LD+A+G R
Sbjct: 61193 LCVSDSNRLFTRESLKAVWHGHKLDLFKAAHVGARAPNPEVIRLDGQKRLRLLDFARGKR 61372
Query: 134 PLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQH 193
PLVLNFGSCT PPFMAR+ AFQRL + DFL++YIEEAHPSDGWV++D+ Y IP+H
Sbjct: 61373 PLVLNFGSCT*PPFMARLRAFQRLAAHFLDIADFLLVYIEEAHPSDGWVSSDAAYKIPKH 61552
Query: 194 RSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 253
+ L+DR+ AA+++++GAPGC L +DTM N+SS+AYGAYFERLY++Q +MYQGGRGP+G
Sbjct: 61553 QCLQDRLRAAQLMREGAPGCPLAVDTMDNASSAAYGAYFERLYIVQEERVMYQGGRGPEG 61732
Query: 254 YQVSELRTWLERYDEQLHG 272
Y++SELR+WL++Y +L G
Sbjct: 61733 YKISELRSWLDQYKTRLRG 61789
>gi|397463745|gb|JH731756.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1225, whole genome shotgun sequence
Length = 1234326
Score = 142 bits (358), Expect = 2e-32
Identities = 77/189 (40%), Positives = 111/189 (58%), Gaps = 22/189 (11%)
Frame = -1
Query: 99 FFKQAHEGGPAPNSEVV-LPDGFQSQ---------------HILDYAQGNRPLVLNFGSC 142
F Q GG APNS V+ + +G H+LD+A RPLV+NFGS
Sbjct: 1182699 FCHQVKLGGEAPNSRVIHITNGISGGSTRCKNVGGKLGSKCHLLDFANSERPLVVNFGSA 1182520
Query: 143 TXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVT---TDSPYIIPQHRSLEDR 199
T PPF +++SAF +LV ++ DFL++YI+EAHPSDGW + S + + +H++ EDR
Sbjct: 1182519 T*PPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKKHKNQEDR 1182340
Query: 200 VSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQV 256
+AA L Q P C +V D M N+++ AYG FER+ ++Q I Y GG+GP Y +
Sbjct: 1182339 CAAAHQLLQRFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNL 1182160
Query: 257 SELRTWLER 265
E++ WLE+
Sbjct: 1182159 QEVQLWLEQ 1182133
>gi|397464218|gb|JH731283.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-461, whole genome shotgun sequence
Length = 1270512
Score = 62.0 bits (149), Expect = 3e-08
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = -2
Query: 131 GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAH 176
GNRPLVLNFGSCT P F+ + F +LV + DFL+IYIEEAH
Sbjct: 1131332 GNRPLVLNFGSCT*PSFLLKFDEFNKLVEDFNPVADFLLIYIEEAH 1131195
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = -3
Query: 179 DGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238
DGW ++ +I H++LEDR AAR L + P C +V+DTM N SSS Y A ERLY++
Sbjct: 1128880 DGWAFKNN-IVIKNHQNLEDRKMAARFLLKKNPLCPVVVDTMENLSSSKYAALPERLYLL 1128704
Query: 239 QSGTIMYQ 246
Q ++Y+
Sbjct: 1128703 QGRKVVYK 1128680
>gi|397460703|gb|JH734798.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6149, whole genome shotgun sequence
Length = 339794
Score = 38.1 bits (87), Expect = 0.40
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +3
Query: 35 LLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRL 82
LL L R GRR+R Q E E E E +E P +DPP SDD R+
Sbjct: 199509 LLPLLPCRSRGRGRRQRVQEEGEGESQEEADEDPLEDPPPPPSDDTRV 199652
>gi|397456056|gb|JH739444.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-13912, whole genome shotgun sequence
Length = 138699
Score = 37.0 bits (84), Expect = 0.90
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Frame = +3
Query: 170 IYIEEAHPSDGWVTTDSPYIIPQHRSLED--------RVSAARVLQQGAPGCALVLDTMA 221
I + E H S+GW T P++ +HR+++ RV A + AP A+V + +
Sbjct: 19368 IILSEVH-SEGWRKTKGPFLSSRHRAVQSFHTSACHARVDAESAEVRPAPSTAIVSPSSS 19544
Query: 222 NSSSSAYGAYF-------ERLYVI--QSGTIMYQGGRGPD 252
+ S YF ERL+ I + G+ QGGRG +
Sbjct: 19545 TTLKSRSSLYFLRFTWRPERLFCIPNKKGS---QGGRGAE 19655
>gi|397459189|gb|JH736312.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-8616, whole genome shotgun sequence
Length = 658311
Score = 35.0 bits (79), Expect = 3.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 49 RRRGQPEPEVELNSEGEEVPP---DDPPICVSDDNRLCTLASLKAVW 92
R+ G P P E + G PP +PPIC+ DD RL LA W
Sbjct: 94567 RQIGGPHPR-EQSGTGPTAPPRGAGEPPICLPDDRRLVLLAGCSLCW 94704
>gi|397462156|gb|JH733345.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-3762, whole genome shotgun sequence
Length = 1948850
Score = 34.7 bits (78), Expect = 4.5
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Frame = -1
Query: 187 PYIIPQHRSLEDRVSAARVLQQGAP----GCALVLDTMANSSSSAYGAYFERLY------ 236
P+ + HR L V+A ++ + AP G LV D + + A+F ++
Sbjct: 64553 PHAVRPHR-LPWPVAARKIRESMAP*LNGGGDLVTDDVGKAE--VLNAFFTSVFTGKVSY 64383
Query: 237 -VIQSGTIMYQGGRGPDGYQVSELRTWLERYDEQLHGA 273
+ G++++ GG P Q ++R + +R DEQLHGA
Sbjct: 64382 QITAPGSMIWGGGEQPTVLQ-EQIRNYFKRLDEQLHGA 64272
>gi|397457120|gb|JH738380.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-12079, whole genome shotgun sequence
Length = 31063
Score = 34.3 bits (77), Expect = 5.8
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 30 AFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLK 89
+F LW DF K+ L +P ++ + VP PP C+SD +R CT + +
Sbjct: 28660 SFTLWRCDF----KYSLSLTNWAKP-----VSFQDARVPATQPPECISDTSRSCTFSICR 28812
Query: 90 AVWHGQKLDFFKQAH 104
H L H
Sbjct: 28813 CALHPSVLKRLDPGH 28857
>gi|397458166|gb|JH737335.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-10334, whole genome shotgun sequence
Length = 131203
Score = 34.3 bits (77), Expect = 5.8
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Frame = +3
Query: 31 FMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKA 90
F L FLC+ + FL +R G+P +V + GE RL L +L
Sbjct: 35499 FFFLLHRFLCLCRQFLAKRGVGEP-GKVPGHKAGE---------------RLHLLGALIP 35630
Query: 91 VW--HGQKLDFFK---QAHEGGPAPNSEVVLPDGFQSQ-HILDYAQGNRPLVLNFGSCTX 144
+ G++L FFK A GGP P + LP G +Q +L A+ P L GS T
Sbjct: 35631 MXLPAGRQLSFFKSPGDASPGGPGPTAPRSLPWGAGAQTSLLGPARRAWPCSLGTGSPTP 35810
Query: 145 PP 146
P
Sbjct: 35811 LP 35816
>gi|397460541|gb|JH734960.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-6410, whole genome shotgun sequence
Length = 109535
Score = 34.3 bits (77), Expect = 5.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 44 HFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVW 92
H LG ++ P E L PP PP+C +CTL +L VW
Sbjct: 64769 HILGTKQHPAPLDEFPL-------PPSSPPLCPPHQIAVCTLTALHLVW 64894
>gi|397457484|gb|JH738017.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-11477, whole genome shotgun sequence
Length = 290835
Score = 33.5 bits (75), Expect = 9.9
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +3
Query: 20 LVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPP 69
LVL P G L+LL+ LC H+LGR GQP E+EL S V P
Sbjct: 137754 LVLCPGAKGAPRHLFLLERLC--SHWLGRIPPGQPCTELELPSMRRNVVP 137897
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.322 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 905,572,806
Number of Sequences: 14644
Number of extensions: 18029525
Number of successful extensions: 62864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 58249
Number of HSP's gapped (non-prelim): 13081
length of query: 278
length of database: 724,747,747
effective HSP length: 128
effective length of query: 150
effective length of database: 722,873,315
effective search space: 108430997250
effective search space used: 108430997250
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
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