TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000011_2.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Human (Homo sapiens)
(309 letters)
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis/g
enome.fa
14,644 sequences; 2,174,243,242 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|397463745|gb|JH731756.1| Alligator mississippiensis unplaced ... 289 9e-77
gi|397456552|gb|JH738948.1| Alligator mississippiensis unplaced ... 150 9e-35
gi|397464218|gb|JH731283.1| Alligator mississippiensis unplaced ... 61 7e-08
gi|397458870|gb|JH736631.1| Alligator mississippiensis unplaced ... 36 1.8
gi|397457284|gb|JH738216.1| Alligator mississippiensis unplaced ... 34 7.0
gi|397463755|gb|JH731746.1| Alligator mississippiensis unplaced ... 34 9.1
>gi|397463745|gb|JH731756.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1225, whole genome shotgun sequence
Length = 1234326
Score = 289 bits (740), Expect = 9e-77
Identities = 146/192 (76%), Positives = 161/192 (83%), Gaps = 1/192 (0%)
Frame = -1
Query: 111 VKLGEDAPNSSVVHVSS-TEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATX 169
VKLG +APNS V+H+++ GG K+ G+ CHLLDFA+ ERPLVVNFGSAT
Sbjct: 1182687 VKLGGEAPNSRVIHITNGISGGSTRCKNVGGKL--GSKCHLLDFANSERPLVVNFGSAT* 1182514
Query: 170 PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCA 229
PPFTSQL AF KLVEEFS VADFLLVYIDEAHPSDGWA PG S SFEVKKH+NQEDRCA
Sbjct: 1182513 PPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKKHKNQEDRCA 1182334
Query: 230 AAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQE 289
AA QLL+RFSLPPQC+VVAD MDNNAN+AYGV+FERVCIVQRQKIAYLGGKGPF YNLQE
Sbjct: 1182333 AAHQLLQRFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQE 1182154
Query: 290 VRHWLEKNFSKR 301
V+ WLE+N SKR
Sbjct: 1182153 VQLWLEQNCSKR 1182118
Score = 141 bits (355), Expect = 4e-32
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = -1
Query: 1 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
MG+LSVDLLITLQILPVFFSNCLFLALYDSVILLKH+VL LSRSKS RGEWRRMLTSEGL
Sbjct: 1194210 MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHMVLFLSRSKSARGEWRRMLTSEGL 1194031
Query: 61 RCVWKSFLLDAYKQL 75
RCVW SFLLDAYKQ+
Sbjct: 1194030 RCVWNSFLLDAYKQV 1193986
>gi|397456552|gb|JH738948.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-13070, whole genome shotgun sequence
Length = 167594
Score = 150 bits (378), Expect = 9e-35
Identities = 89/221 (40%), Positives = 124/221 (56%)
Frame = +2
Query: 89 LXLVYEAYKSRLLVYSHLDLWMVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATC 148
L V+ +K L +H+ G APN V+ + Q+++
Sbjct: 61235 LKAVWHGHKLDLFKAAHV-------GARAPNPEVIRLDG-----------QKRL------ 61342
Query: 149 HLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAI 208
LLDFA +RPLV+NFGS T PPF ++L AF++L F +ADFLLVYI+EAHPSDGW
Sbjct: 61343 RLLDFARGKRPLVLNFGSCT*PPFMARLRAFQRLAAHFLDIADFLLVYIEEAHPSDGWV- 61519
Query: 209 PGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCI 268
S ++++ KHQ +DR AAQ + E P C + D MDN ++ AYG FER+ I
Sbjct: 61520 --SSDAAYKIPKHQCLQDRLRAAQLMREG---APGCPLAVDTMDNASSAAYGAYFERLYI 61684
Query: 269 VQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSKRXKKTRLAG 309
VQ +++ Y GG+GP Y + E+R WL++ KTRL G
Sbjct: 61685 VQEERVMYQGGRGPEGYKISELRSWLDQ------YKTRLRG 61789
>gi|397464218|gb|JH731283.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-461, whole genome shotgun sequence
Length = 1270512
Score = 60.8 bits (146), Expect = 7e-08
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = -2
Query: 145 GATCHLLDFASP--ERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAH 201
G C + F S RPLV+NFGS T P F + F KLVE+F+ VADFLL+YI+EAH
Sbjct: 1131371 GFKCLTIYFMSVLGNRPLVLNFGSCT*PSFLLKFDEFNKLVEDFNPVADFLLIYIEEAH 1131195
Score = 48.9 bits (115), Expect = 3e-04
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -3
Query: 204 DGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAF 263
DGWA + +K HQN EDR AA+ LL++ P C VV D M+N ++ Y
Sbjct: 1128880 DGWAFKNN----IVIKNHQNLEDRKMAARFLLKK---NPLCPVVVDTMENLSSSKYAALP 1128722
Query: 264 ERVCIVQRQKIAY 276
ER+ ++Q +K+ Y
Sbjct: 1128721 ERLYLLQGRKVVY 1128683
>gi|397458870|gb|JH736631.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-9144, whole genome shotgun sequence
Length = 140901
Score = 36.2 bits (82), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 51 WRRMLTSEGLRCVWKSFLLDAYKQLNCPPSGFSKDGHILXLV 92
W ++ S+GLR W S ++ NC G KDG +L +V
Sbjct: 138107 WPKLARSKGLRRTWPSLRTPSHDTFNCLKGGLKKDGAVLSVV 138232
>gi|397457284|gb|JH738216.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-11811, whole genome shotgun sequence
Length = 253508
Score = 34.3 bits (77), Expect = 7.0
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +2
Query: 172 FTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRC--- 228
+TSQ ++ E S + + V+ H S W P SSL + +H D C
Sbjct: 144782 WTSQPVIVCRMGGEKGSGGNSVWVFFSTPHFSTSWGAPRTSSLGSDNNEHWQSHDHCYGN 144961
Query: 229 -AAAQQLLERFSLPPQCR 245
AA Q + RF LPP R
Sbjct: 144962 LAAGSQPMARF-LPPAFR 145012
>gi|397463755|gb|JH731746.1| Alligator mississippiensis unplaced genomic
scaffold scaffold-1211, whole genome shotgun sequence
Length = 888356
Score = 33.9 bits (76), Expect = 9.1
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -3
Query: 78 PPSGFSKDGHILXLVYEAYKSRLLVYSH---LDLWMVKLGEDAPNSSVVHVSSTEGGDN 133
PP K H L ++ E Y + +LVY H L++++ +L E P + V HV + GD+
Sbjct: 843963 PPCFLKKHSHQL-IM*EKYGASILVYKHLESLEMFLAELRESVP*TLV*HVHKSHSGDS 843790
Database: /cursos/BI/genomes/project_2014/Alligator_mississippiensis
/genome.fa
Posted date: Oct 18, 2013 5:53 PM
Number of letters in database: 2,174,243,242
Number of sequences in database: 14,644
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 940,798,199
Number of Sequences: 14644
Number of extensions: 15718097
Number of successful extensions: 60512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 56399
Number of HSP's gapped (non-prelim): 11467
length of query: 309
length of database: 724,747,747
effective HSP length: 129
effective length of query: 180
effective length of database: 722,858,671
effective search space: 130114560780
effective search space used: 130114560780
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)