Find start end points: [0,35792][300,47882] Score 157697
Recovering alignment: Alignment recovered Explicit read offfe 89%

genewise output
Score 455.02 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

Information
	Name gi|397463745|gb|JH731756.1|:subseq(1130000,100000) is longer
than allowed name block (15). Truncating

SPP00000011_2.0    1 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRG 
                     MG+LSVDLLITLQILPVFFSNCLFLALYDSVILLKH+VL LSRSKS RG 
                     MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHMVLFLSRSKSARG 
gi|397463745|g-64210 agctaggtcaaccatcgtttatctcgctgtgaccacagctcactatgcg 
                     tgttgtatttctattctttcagtttctaacttttaatttttggcaccgg 
                     gtgacgtggcgtgcgattcctccctactttgccggcgggtgtgtgtgtt 


SPP00000011_2.0   50 EWRRMLTSEGLRCVWKSFLLDAYKQLNCPPSGFSKDGHILXLVYEAYK  
                     EWRRMLTSEGLRCVW SFLLDAYKQ+    +GF +   +     + Y+  
                     EWRRMLTSEGLRCVWNSFLLDAYKQVG!NETGFKRT-RVSVYSVQGYR  
gi|397463745|g-64063 gtcaacatggcctgtaatccggtacgg1agagtaaa agagttgcgta  
                     agggttccagtggtgagtttacaaatg aacgtagc gtgtactagag  
                     ggagggcagggtccgtcccattcaggt tgtgtgaa agttcttggcg  


SPP00000011_2.0   98                           SRLLVYSHLDLWMVKLGEDAPNS 
                                                 L ++ H     VKLG +APNS 
                               -:L[tta]        TLLSLFCH----QVKLGGEAPNS 
gi|397463745|g-63924 TGTAAGGA  Intron 1   CAGTAattttttc    cgacggggcat 
                      <1-----[63923:52717]-1>  cttcttga    atatggaccac 
                                               tagtgtct    ggagtaacacc 


SPP00000011_2.0  121 SVVHVSS-TEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT 
                      V+H+++   GG         K+  G+ CHLLDFA+ ERPLVVNFGSAT 
                     RVIHITNGISGGSTRCKNVGGKL--GSKCHLLDFANSERPLVVNFGSAT 
gi|397463745|g-52657 agacaaagaaggaaataagggat  gaatcctgtgatgcccggatgtga 
                     gttatcagtggggcggaatggat  ggagattatcacagctttatgccc 
                     agtcactccttctcacgtttagg  gcgttcgttcctgtcggccttatc 


SPP00000011_2.0  169 XPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFE 
                     XPPFTSQL AF KLVEEFS VADFLLVYIDEAHPSDGWA PG S  SFE 
                     XPPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFE 
gi|397463745|g-52516 tcctaacctgtaacgggttggggtctgtagggcctggtggcgatctttg 
                     gcctcgatcctgattaatcgtcattttataacaccaggcccgtccccta 
                     atacgcggacccgggggtatgcccggcctcgtcagttgtttacgctatg 


SPP00000011_2.0  218 VKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERV 
                     VKKH+NQEDRCAAA QLL+RFSLPPQC+VVAD MDNNAN+AYGV+FERV 
                     VKKHKNQEDRCAAAHQLLQRFSLPPQCQVVADCMDNNANVAYGVSFERV 
gi|397463745|g-52369 gaacaacggctgggcccccatttccctcggggtagaagaggtggttgcg 
                     taaaaaaaaggcccaattagtctccagattcagtaaacatcagtctagt 
                     gggcgcgacatattcgcgggtcgccgcaagtccgtttctactgcctgcg 


SPP00000011_2.0  267 CIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSKR               
                     CIVQRQKIAYLGGKGPF YNLQEV+ WLE+N SKR               
                     CIVQRQKIAYLGGKGPFFYNLQEVQLWLEQNCSKR               
gi|397463745|g-52222 tagcccaagtcggagctttaccggcctcgcataaa               
                     gttagaatcatggagcttaataatatgtaaaggag               
                     tcggagattcggcgcctccccgatgtgtaacccga               


//
Making a L in phase 1 intron
>gi|397463745|gb|JH731756.1|:subseq(1130000,100000).pep
MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHMVLFLSRSKSARGEWRRMLTSEGL
RCVWNSFLLDAYKQVGXNETGFKRTRVSVYSVQGYRLTLLSLFCHQVKLGGEAPNSRVIH
ITNGISGGSTRCKNVGGKLGSKCHLLDFANSERPLVVNFGSATXPPFTSQLSAFSKLVEE
FSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKKHKNQEDRCAAAHQLLQRFSLPPQCQ
VVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQEVQLWLEQNCSKR
//
>gi|397463745|gb|JH731756.1|:subseq(1130000,100000).[64210:63981].sp
ATGGGTCTGTTAAGCGTGGATTTGCTGATCACGCTTCAGATCTTGCCAGTTTTTTTCTCC
AATTGCCTCTTCCTTGCACTCTATGATTCTGTGATCCTCCTGAAGCACATGGTGCTGTTT
CTGAGTCGGTCTAAGTCTGCGCGTGGTGAGTGGCGAAGGATGCTGACCTCAGAGGGGCTG
CGTTGCGTCTGGAATAGCTTCCTCCTAGATGCTTACAAACAGGTGGGT
>gi|397463745|gb|JH731756.1|:subseq(1130000,100000).[63981:52116].sp
AATGAGACTGGGTTTAAGAGAACAAGAGTGAGTGTTTACTCTGTTCAGGGGTACAGGTTA
ACTTTATTGTCTTTGTTTTGCCATCAGGTGAAACTGGGTGGAGAAGCCCCAAACTCCAGA
GTGATTCACATAACCAATGGCATCAGTGGTGGCAGTACCAGATGCAAGAATGTTGGTGGA
AAGTTGGGGAGCAAGTGTCATCTCTTGGATTTTGCCAACTCTGAGCGTCCCCTGGTGGTC
AACTTTGGTTCAGCTACCTGACCTCCATTCACGAGCCAGCTGTCAGCCTTCAGCAAGCTG
GTGGAGGAGTTTTCAGGTGTGGCCGACTTCCTGTTGGTCTACATTGACGAGGCTCACCCA
TCGGATGGTTGGGCTGCTCCTGGAATCTCGCCCTCTTCATTTGAGGTGAAGAAGCACAAG
AACCAGGAAGACCGATGTGCAGCTGCTCACCAGCTCCTGCAGAGGTTTTCCTTGCCCCCC
CAGTGCCAAGTAGTGGCTGACTGCATGGATAATAATGCCAATGTAGCCTATGGGGTCTCC
TTTGAGCGCGTGTGTATCGTGCAGCGACAGAAAATTGCTTACCTGGGGGGCAAGGGCCCC
TTTTTCTACAACCTCCAGGAAGTTCAGCTTTGGCTTGAACAAAACTGCAGCAAGAGA
//
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	match	64210	63983	153.00	-	.	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-1
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	cds	64210	63983	0.00	-	0	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-1
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	match	63981	52118	306.01	-	.	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-2
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	cds	63981	63924	0.00	-	0	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-2
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	intron	63923	52717	0.00	-	.	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-2
gi|397463745|gb|JH731756.1|:subseq(1130000,100000)	GeneWise	cds	52716	52118	0.00	-	2	gi|397463745|gb|JH731756.1|:subseq(1130000,100000)-genewise-prediction-2
//