------- SECIS element -- id:1 -- grade:A ---- Chromosome = gi|431904373|gb|KB030791.1|:subseq_5000000,120000_ Strand = + Positions = 56155 - 56229 Found by: Infernal (score=29.92) Covels (score=25.53) Stem2 length = 8 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -14.87 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((((((((--....([[{((({(({(((..................)))}))})))}]])..--...))))))))). target CAGAUGCCAG--ACAAUGACGACCUGCGCAAAAACUCACCCUGUGGGCUGCCCACGUCCGAGCC--UCCCUGGUGUUUC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = gi|431904373|gb|KB030791.1|:subseq_5000000,120000_ Strand = + Positions = 38774 - 38812 Found by: Infernal (score=10.64) Stem2 length = 12 Apical loop length = 8 Insertion in stem2 = 1, 0 Free Energy = -12.5 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc -----------------[[{((((((.((((((.......-----.))))))))))))}]]------------------ target -----------------GACACCUUUGAGCCGAAACGCUU-----CUUGGCUGGAGGUUGA------------------ *** ^^ ***