------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431920154|gb|KB030334.1|:subseq_198987,100000_ Strand = + Positions = 4402 - 4478
 Found by:  Infernal (score=26.23) Covels (score=23.6)
 Stem2 length = 10   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -23.0

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(([((((((--....{[[{((((((((((.....................))))))))))}]]}..--..-))))))])).
 target  GAGACUCAGC--ACGAUGACGAAAAGGGCUGAAAUGUUGCCUUCAGGGUCAGGUCCUUUUCCGAUGG--UG-GCUGGGGCUG
                         ****           ^^^                           ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431920154|gb|KB030334.1|:subseq_198987,100000_ Strand = + Positions = 56307 - 56387
 Found by:  Infernal (score=12.61) Covels (score=11.29)
 Stem2 length = 12   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -23.15

         ..(((((((................(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((................([[{(((((((((((((((...))-----)))))))))))))}]])..--....)))))))..
 target  AAUUCAGUUACUCCAAAUGCCUGUAAGACGCCGAUUAGAGAAACUACGU-----UUCUCUAAUUGGCUGAUUU--CUAGGGCUGGGGC
                                  ****            ^^                        ****