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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 6e-17
 Query name: gi|6470251|gb|AAF13696.1|AF195141_1 selenoprotein T [Homo sapiens] >gi|27807648|dbj|BAC55254.1| unnamed protein product [Mus musculus] >gi|27807653|dbj|BAC55259.1| unnamed protein product [Mus musculus] >gi|27807655|dbj|BAC55261.1| unnamed protein product [Mus musculus] >gi|110611796|gb|AAH38867.2| 2810407C02Rik protein [Mus musculus] >gi|112180386|gb|AAH19970.1| RIKEN cDNA 2810407C02 gene [Mus musculus]
 Query range: 1-163  (total 163)

 Target: /data/www-rg/seblastian_results/70096402/tempfiles/temptarget.fasta
 Chromosome: gi|431838610|gb|KB031157.1|:subseq_1496827,102000_ Strand: +
 Positions:
 -Exon 1  2096         2136
 -Exon 2  15995        16105
 -Exon 3  16597        16723
 -Exon 4  19393        19480
 -Exon 5  21871        21992

 Redox box: YES

Query   MQYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR <---Intron---> HIASFLSVFKLVLIGLI
        |||||||||||||| <  13858bp   > |||||||||||||||| |||||||||||||||||||| <   491bp    > |||||||||||||||||
Target  MQYATGPLLKFQIC                VSUGYRRVFEEYMRVIRQRYPDIRIEGENYLPQPIYR                HIASFLSVFKLVLIGLI
        actgagcccatcat                gttgtacgtggtacgaacctcgacagggatccccata                cagttctgtacgtagta
        taaccgcttatatg                tcggaggttaaatgttgagacatgtagaaatcactag                atccttcttattttgtt
        ggccggggcgcgt                ttcattgggtggcgattgggcaccctaagtcctaaat                acaatcgaccaaaaacaa
                                        *                                                                   

Query   IVGKDPFAFFGMQAPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEITLND <---Intron---> VPVWSKLESGHLP
        ||||||||||||||||||||||||| <   2669bp   > |||||||||||||||||||||||||||||| <   2390bp   > |||||||||||||
Target  IVGKDPFAFFGMQAPSIWQWGQENK                VYACMMVFFLSNMIENQCMSTGAFEITLND                VPVWSKLESGHLP
        aggagctgttgacgcaatctgcgaa                gtgtaagtttaaaagactataggtgaatag                gcgttacgtgccc
        ttgaactcttgtaccgtgaggaaaa                tacgttttttgattaaagtccgctatcta                atctgcatacgatc
        ttcgttttctcgattccgggcaacg                ctatggtccgccgtgcgtgaatatgatgt                tatggtggattcta
                                                                                                            

Query   SMQQLVQILDNEMKLNVHMDSIPHHRS
        |||||||||||||||||||||||||||
Target  SMQQLVQILDNEMKLNVHMDSIPHHRS
        tacccgcacgagaacagcagtacccct
        ctaattattaaatatatatactcaagc
        cgagttattctaggctgtgtacattaa
                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 572 ; UGA-SECIS: 1010

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431838610|gb|KB031157.1|:subseq_1496827,102000_ Strand = + Positions = 22565 - 22639
 Found by:  Infernal (score=30.25) Covels (score=39.15)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -14.32

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([((([(---(...{[[{(({(((((((((.............)))))))))}))}]]}.....-..))])))])..
 target  GUGACUGAC---AUUAUGAAGGCCUGUACUGAAGACAGCAAGCUGUUAGUACAGACCAGAUGCUUU-CUUGGCAGGCUC
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