_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-28
 Query name: gi|168693639|ref|NP_001108223.1| selenoprotein X, 1 [Pan troglodytes]
 Query range: 1-112  (total 114)

 Target: /data/www-rg/seblastian_results/92172618/tempfiles/temptarget.fasta
 Chromosome: gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand: +
 Positions:
 -Exon 1  1000         1054
 -Exon 2  2984         3132
 -Exon 3  3463         3577
 -Exon 4  4536         4552

 Redox box: no

Query   MSFCSFFGGEVFQNHFEPG <---Intron---> VYVCAKCGYELFSSCSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK <---Intron---> 
        ||||||||||||||||||| <   1929bp   > ||||||||||||||||||||||||||||||||||||||||/|| ||| | <   330bp    > 
Target  MSFCSFFGGEVFQNHFEPG                VYVCAKCGYELFSSCSKYAHSSPWPAFTETIHADSVAKRPDHNLPEAFK                
        atttattggggtcactgcg                gtgtgatgtgcttattatgcttctcgtagaacggaggaccgcaccggta                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaatcacta                
        ggcccccgcgtcgcctgg                tctgccgtctgctcccagtatgtagacccgccttctgcgtatctgtactg                
                                                                                                            

Query   VSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKE <---Intron---> TSASQ
        ||||/||||||||||||||| |||||||||||||||||| <   958bp    > |||||
Target  VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKE                TSASQ
        gttgatgagtgcgtcaggcacgctcttataatcatgcag                atgtc
        tcgggggagtgaattaagcaggacgtgttggctattca                acccca
        ccccgtcttgctgcgctcaggggcccaacctgggtcta                atatcg
                                  *                                 
 Sequence until next stop: 
AGGAAGTAG
 R  K  * 

 Distance CDS-SECIS: 480 ; UGA-SECIS: 531

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand = + Positions = 5033 - 5102
 Found by:  Infernal (score=26.23) Covels (score=23.57)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -18.02

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....{[[{{((((((((((.....--........))))))))))}}]]}..--..-.)))))....
 target  CCCAGUCAC---UACAUGAUUUGCUCUGGUUAAACC--UUCCAAGCAGCCAGAGUGCUGAUGA--UC-CGUGACCCAU
                         ****           ^^^                       ****