------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand = + Positions = 5033 - 5102
 Found by:  Infernal (score=26.23) Covels (score=23.57)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -18.02

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....{[[{{((((((((((.....--........))))))))))}}]]}..--..-.)))))....
 target  CCCAGUCAC---UACAUGAUUUGCUCUGGUUAAACC--UUCCAAGCAGCCAGAGUGCUGAUGA--UC-CGUGACCCAU
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand = - Positions = 179575 - 179505
 Found by:  Infernal (score=16.52) Covels (score=12.46)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(({(((--....([[(((({(((((((.....---.......)))))))}))))]])..--...)))}))})..
 target  GUGCUACACA--CGAGUGAUAACUGGGUCAGAAGAC---CUCCACCCUGACCCUGUUAGAGCC--CUCUGUCUACUUA
                         ****           ^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand = - Positions = 21082 - 21000
 Found by:  Infernal (score=11.32) Covels (score=6.26)
 Stem2 length = 12   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -24.95

         ..(((((((.......(((((((((((((((......................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg-------cgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(({{((((--....([{(((((((((((((....................)))))))))))))}])......-.-))))}}))..
 target  GAGAACUAGG--UCAAUGGAGGCAGAGGCUGUGGGAUCUGUGCUAGGAAGGAGCGGUCUCUGCCUGAGGCCUUG-C-CCUGCCUUCA
                         ****                                            ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = gi|431906547|gb|KB030715.1|:subseq_5574653,300000_ Strand = - Positions = 91950 - 91873
 Found by:  Infernal (score=10.42) Covels (score=8.59)
 Stem2 length = 7   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -8.39

         ..(((((((............(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((............{[[((({{(((((..........-----....)))))}})))]]}......-.-.)))))))..
 target  GAUAUAGUGGUGAGGACCAAAUGAGGGAUGUAUGGGAAAGUGCU-----UUGACAUACCAUCUGAUUCAAUC-C-AUGCUAUGGG
                              ****           ^^^                       ****