------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431899758|gb|KB030947.1|:subseq_24282320,210000_ Strand = + Positions = 12509 - 12595
 Found by:  Infernal (score=22.69) Covels (score=32.25)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -6.89

         ..(((((((..............(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((................))))))))))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUUGUGUUGGGAAUUCCCUCACAGGGAUCCGGCAUGACUGACAUGCAG-UUCUAUAAAUGC
                                ****           ^^                         ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431899758|gb|KB030947.1|:subseq_24282320,210000_ Strand = - Positions = 46838 - 46760
 Found by:  Infernal (score=13.74) Covels (score=10.37)
 Stem2 length = 7   Apical loop length = 25   Insertion in stem2 = 0, 0
 Free Energy = -7.01

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({{(([(.......([[{(((({(((.........................)))}))))}]])..--..-.)]))}})).
 target  UGGCAGAAUGCAUGAAUGAAGGGGAAAGGUCAAAGCAUCUUCUUCAAAGGUCACUUCCCCCAGAGAC--CU-GAGUCACCUC
                         ****           ^^                            ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431899758|gb|KB030947.1|:subseq_24282320,210000_ Strand = + Positions = 155002 - 155086
 Found by:  Infernal (score=12.22) Covels (score=12.53)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -8.41

         ..(((((((............(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .({(({(((............{[[((((({({((((...............))))})})))))]]}.......-...)))}))}).
 target  CAAUGCUGUCCCCAGCGACGAUGAAGGGAAGCAGAUAAUGCAGGUAAGGGCAUUUACCUCCCUGACACAGCUG-CUAACACCACUA
                              ****           ^^                        ****                    

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = gi|431899758|gb|KB030947.1|:subseq_24282320,210000_ Strand = - Positions = 132728 - 132646
 Found by:  Infernal (score=11.52) Covels (score=5.39)
 Stem2 length = 9   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -15.34

         ..(((((((........(((((((((((((((............................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-------------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((((......([[{((({((((((------(((((..............)))))))))))})))}]])..--.)-)))))})...
 target  CAGUCCAAGAUGUUUAAUGAUGCCAUGGACA------UCUUGAACAUGGUCUUCACUGGGGUGUUCACGGUUGAGAU--GG-UUUUGAAAGU
                          ****                                                  ****