_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-11
 Query name: gi|50083289|ref|NP_277040.1| ethanolaminephosphotransferase 1 [Homo sapiens] >gi|226442905|ref|NP_001140169.1| ethanolaminephosphotransferase 1 [Pan troglodytes] >gi|172046233|sp|Q9C0D9.3|SELI_HUMAN RecName: Full=Ethanolaminephosphotransferase 1; Short=hEPT1; AltName: Full=Selenoprotein I; Short=SelI >gi|52078126|tpg|DAA01514.1| TPA_exp: selenoprotein I [Homo sapiens]
 Query range: 172-397  (total 397)

 Target: /data/www-rg/seblastian_results/986219514/tempfiles/temptarget.fasta
 Chromosome: gi|431911798|gb|KB030580.1|:subseq_15683000,102000_ Strand: +
 Positions:
 -Exon 1  1080         1139
 -Exon 2  2175         2283
 -Exon 3  9126         9174
 -Exon 4  10537        10717
 -Exon 5  11898        12080
 -Exon 6  14274        14369

 Redox box: no

Query   WEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIG <---Intron---> CALCVTLPMSL
        ||||| |/|||||||||||| <   1035bp   > ||||||||||/|||||||||||||||||||||||||| <   6842bp   > ||/||||||||
Target  WEKYNAGVLFLPWGYDISQV                TISFVYIVTAIVGVEAWYEPFLFNFLYRDLFTAMIIG                CAICVTLPMSL
        tgatagggctcctgtgaacg                aattgtagagagggggttgctctatttagctagaaag                tgatgaccaat
        gaaaacgttttcggaatgat                ctcttattccttgtacgaactttattagattccttt                ggctgtctctgt
        gagtcagttcgagatctcgg                atttccagtgtgatgcgtatcgttcatacactagtt                ttaatgttagta
                                                                                                            

Query   LNFFR <---Intron---> SYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST <---Intron---> CQL
        ||||| <   1362bp   > ||/||||| ||||||/||/||||||||||||||| |||||||/||||||||||||||||| <   1180bp   > |||
Target  LNFFR                SYRNNTLKHNSVYEALVPIFSPCLLFILSTAWILQSPSDILEIHPRVFYFMVGTAFANST                CQL
        tatta                ataaaatacatgtggcgcattcttctattagtacctctgatgaccagtttaggagtgaaa                tcc
        tattg                gagaactaaactaacttcttccgtttttcccgttacccattatacgttatttgcctcagc                gat
        acct                actatccgactactatgtccttatgactgtaagccgatattagattaacctgtaactccca                tgg
                                                                                                            

Query   IVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV <---Intron---> VKQLSSHFQIYPFSLRKPNSDULGME
        ||||||||||||||||||||||||/|/|||||||/||/||||||  ||/||||||||| <   2193bp   > ||||||||||||||||||||||||/|
Target  IVCQMSSTRCPTLNWLLVPLFLVVMVINLGVASYIESVLLYTLTIVFTVAHIHYGVRV                VKQLSSHFQIYPFSLRKPNSDULGIE
        agtcaaaactcatatttgccttggagaatgggttagagcctataagtaggcactggcg                gaccaactcatctttaacatgtcgag
        ttgatggcggcctagtttcttttttttatgtccatagtttactctttctcataagtgt                taatggatatactctgacacagtgta
        tttagctcgtatgtgggttccgtcggacaatctttgcttgtaaattctgcccttaaag                agagccttgtcccaggaacataaaaa
                                                                                                       *    

Query   EKNIGL
        ||||||
Target  EKNIGL
        gaaagc
        aaatgt
        agctta
              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1233 ; UGA-SECIS: 1263

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = gi|431911798|gb|KB030580.1|:subseq_15683000,102000_ Strand = + Positions = 15603 - 15685
 Found by:  Infernal (score=22.47) Covels (score=9.08)
 Stem2 length = 10   Apical loop length = 24   Insertion in stem2 = 0, 1
 Free Energy = -7.86

         ..(((((((.......(((((((((((((((......................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ...(({({((......{[[[((((((((((........................))).)))))))]]]}..--..-))})}))...
 target  GAAGUUUGUGCUUGAAUGAAGAGUGUAUCCUAAACCCUCUUUUUUUUUUUGGAUGGAUUGCACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                               ****