------- SECIS element -- id:1 -- grade:B ----
 Chromosome = gi|431918504|gb|KB030399.1|:subseq_378636,300600_ Strand = - Positions = 267780 - 267706
 Found by:  Infernal (score=17.07) Covels (score=7.46)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -15.92

         ..(((((((.......(((((((((((((((..................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([((({((......{[[{((((((((((------((..........))))))))))))}]]}.....-..))})))])..
 target  GGGACUGCGGAAUCUAUGACUUCUACUUAU------CAGAGGAAGAGGUGAUAAGUAGGAUGAUGCUCA-UACCUUAGGUAA
                         ****                                        ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431918504|gb|KB030399.1|:subseq_378636,300600_ Strand = - Positions = 35457 - 35389
 Found by:  Infernal (score=13.79) Covels (score=0.29)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -16.0

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({(((((((--....([{[(({(((((((------(((......))))))))))}))]}])..--...)))))))}))
 target  UAAAUGUUUG--CGAAUGGAGAAGGGUUUU------UAUCACGACGUAGAAAUCCCUUGGAAGC--UCUCAGACAUCUG
                         ****                                      ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431918504|gb|KB030399.1|:subseq_378636,300600_ Strand = + Positions = 12578 - 12648
 Found by:  Infernal (score=13.1) Covels (score=1.69)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.73

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({((((((---(...{[[{(((((((((.......--..........)))))))))}]]}..--...)))))))}))
 target  UAACAGUUA---AGCGUGAAGAUGUUUGUAAAACGU--UUAGCCCACGAUGAGCAUUCGAUAA--ACAUUAGCUGCUG
                         ****         ^^^                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = gi|431918504|gb|KB030399.1|:subseq_378636,300600_ Strand = - Positions = 55740 - 55661
 Found by:  Infernal (score=12.26) Covels (score=6.93)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -12.86

         ..(((((((.......(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .(((({(((.......([[{((((((((((......-..........))))))))))}]])........-...)))})))).
 target  AGAAGUGACCUCUCAGUGACUUCUCUUUUUGUAGGU-UCCCCUGGGAGAAAAGAGGAAGAAAAGGAAUC-CAAGUCUUUUCA
                         ****                                     ****                     

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = gi|431918504|gb|KB030399.1|:subseq_378636,300600_ Strand = + Positions = 18890 - 18969
 Found by:  Infernal (score=10.98)
 Stem2 length = 9   Apical loop length = 22   Insertion in stem2 = 0, 1
 Free Energy = -15.95

         ..(((((((.......(((((((((((((((........................))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---------cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         (({(((({((......{[[((((((((((.------.....................))))))).)))]]}..--...))}))))}))
 target  ACUAAGUCGGUGGUUGUGAAGAGCUGGACC------AUUGGGAUCAUCAACCGAGCAGUUCAGCUUCUGAUCA--UCUCCUACUUUGU
                         ****                                               ****