------- SECIS element -- id:1 -- grade:B ----
 Chromosome = gi|431918212|gb|KB030405.1|:subseq_3395848,500000_ Strand = + Positions = 218438 - 218521
 Found by:  Infernal (score=12.6)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -14.01

         ..(((((((............((((((((((.(((((................))))).))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..((((({(((..........([[(({(((((((((..................)))))))))}))]])..--..)))})))))..
 target  UUAAUGGCGGUACGAAGUACGUGAAGCGUCAGAGGCCAAAAACAAAAAGGCCUAGCCUUUGAUUUUGAAAU--UCAUUCCCAUUUC
                              ****            ^^^                         ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431918212|gb|KB030405.1|:subseq_3395848,500000_ Strand = - Positions = 257501 - 257426
 Found by:  Infernal (score=12.55) Covels (score=6.37)
 Stem2 length = 8   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -13.65

         ..(((((((...........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...({(((((..........{[[(({(((((((.-........-----....)))))))}))]]}.....-..)))))})...
 target  UAGGACAUGGAGAAGCUGAAUGAGGAUCUGAAGG-AAGCCAGA-----GAAACUUCAGGACUGACAGUUG-UCCCAUGCCAAC
                             ****           ^^                        ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431918212|gb|KB030405.1|:subseq_3395848,500000_ Strand = + Positions = 323698 - 323761
 Found by:  Infernal (score=10.06) Covels (score=0.35)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -6.3

         ..(((((((.......((((((((((((.(((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(({(---(...([[((({((([(.((......--------...)))])))})))]])..--.--))}))}))).
 target  CACCACAGC---UUCAUGAAUUAUUAAUAUCCACACC--------UGAGAAGUAAAAAUGAGGC--U--GGGUGAGGUU
                         ****                                      ****