------- SECIS element -- id:1 -- grade:A ---- Chromosome = gi|431918010|gb|KB030406.1|:subseq_2448469,110000_ Strand = + Positions = 13231 - 13306 Found by: Infernal (score=21.27) Covels (score=29.38) Stem2 length = 9 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -17.78 ..(((((((.......(((((((((((((((...............)))))))))))))))...........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc (({(((([(.--....([[((({(((({(((.....--........)))}))))})))]]).......-...)]))))})) target GGGUGGCAUC--UCCAUGAGGGAGGGGCCCGAAGCC--CUUGUGGGCGGACCUCCCCUGAGACUGUCU-GAAGGGCCAGCC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = gi|431918010|gb|KB030406.1|:subseq_2448469,110000_ Strand = + Positions = 38066 - 38135 Found by: Infernal (score=10.32) Covels (score=8.53) Stem2 length = 9 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -5.0 ..(((((((.......((((((((((.(((((...............))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc ...((({{((--(...([[{{({((([((((------...........))))])))})}}]])..--..)))}})))... target UCAGUCAAUU--CUCAUGACAGCUCUGUACU------CCCAUUUUAAAGGUAAGGAACCUGAGGC--UUGGAAAGGUCAC **** ^^ ****