------- SECIS element -- id:1 -- grade:A ---- Chromosome = gi|431904446|gb|KB030790.1|:subseq_3350358,300000_ Strand = - Positions = 199426 - 199362 Found by: Infernal (score=31.76) Covels (score=25.95) Stem2 length = 9 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -24.9 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...)))))))).. target GGCCUUCAC---AGAAUGAUGGCACUUUCCUAAACU-UG-----UAUGGGCGGUGUCUGAG----ACAUGUGAAGGGC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = gi|431904446|gb|KB030790.1|:subseq_3350358,300000_ Strand = + Positions = 166532 - 166607 Found by: Infernal (score=10.99) Covels (score=8.75) Stem2 length = 11 Apical loop length = 9 Insertion in stem2 = 0, 1 Free Energy = -13.2 ..(((((((........(((((((((((((((...............))))))).))))))))..........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc ...((({{(((((....([[{((((((((({(((.......))----)}))))).))))}]])....))-)-))}})))... target GUCUUAUGACAGUAUUAUGACAUCAUGAAGGUAGCUCUGGUUU----GGCUUCAUUGAUUGAAGCUGAU-U-GUGUUAGUCC **** ****