_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-76
 Query name: gi|169636441|ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/723052978/tempfiles/temptarget.fasta
 Chromosome: gi|431904446|gb|KB030790.1|:subseq_3350358,300000_ Strand: -
 Positions:
 -Exon 1  202239       202460
 -Exon 2  199650       199997

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||/|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| <   2241bp   > ||| ||||||
Target  MAYIAKSFYDLTAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTHLNELQCRFPRRLVVLGFPCNQFGHQ                ENCHNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatcctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcgcccccttccgtgggatccacacgaggtgtgtgcacaccgccccccggacctcgcggttcccccatatg                accttggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPLSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtcctgtacgtctctcagtggttgcgtttcccggcgcttttccattcgttcgcctgcagccacgcgctggcttcagggccacccccctccctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 223 ; UGA-SECIS: 673

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431904446|gb|KB030790.1|:subseq_3350358,300000_ Strand = - Positions = 199426 - 199362
 Found by:  Infernal (score=31.76) Covels (score=25.95)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -24.9

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({(((......-..-----...)))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACUUUCCUAAACU-UG-----UAUGGGCGGUGUCUGAG----ACAUGUGAAGGGC
                         ****           ^^^                       ****