_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-38
 Query name: gi|169403978|ref|NP_001108591.1| glutathione peroxidase 1 [Canis lupus familiaris]
 Query range: 3-205  (total 205)

 Target: /data/www-rg/seblastian_results/189504654/tempfiles/temptarget.fasta
 Chromosome: gi|431913378|gb|KB030552.1|:subseq_684800,269750_ Strand: -
 Positions:
 -Exon 1  1316         1567
 -Exon 2  725          1081

 Redox box: no

Query   AAALAAAAVAAAPRSVYAFSARPLAGGEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> 
         || |||  |||| ||||/||||||||||/|||||||||||||||||||||||||||||||||||||||||||||||||||||| <   234bp    > 
Target  TAAAAAAQAAAAPGSVYAYSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                
        aggggggcggggcgtgtgttgcccggggcgacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                
        cccccccacccccgctacaccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                
        ggcggcgggtgcgccgtcccgcgggcggcgcgccggcgggctgtgggcacagcgcccggcggggccgcgtgggcccgccgcgtg                
                                                        *                                                   

Query   ENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDTTALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFP
        || ||||||||||||||||||||||||||||/|||||||||| ||||/|||||||||||||||||| ||||||||/|||||||||| |||||||||||||
Target  ENTKNEEILNSLKYVRPGGGFEPNFTLFEKCDVNGAQAHPLFTFLREALPAPSDDTTALMTDPKFIIWSPVCRNDIAWNFEKFLVGRDGVPVRRYSRRFP
        gaaaaggacatcatgccgggtgcatactgatggaggcgccctattaggccgcaggaagcaagcataattcgtcagagtatgatcggcgggcgcatacctc
        aacaaaattactaatgcgggtacatcttaagatagcacacttcttgactcccgaacccttcacatttgcctggaatcgataatttggagtctggagggtc
        accacagcgttcgccatccgcgcccgccggccgccaggcgccccgggtgggctccccgagctcgcccgtgacccctcgccggcggcgccttgcacccccg
                                                                                                            

Query   TIDIEPDIEALLSQGPSCA
        ||||||||||||||||| |
Target  TIDIEPDIEALLSQGPSSA
        aagagcgaggcctcgcaag
        ctatacatacttcagcggc
        ccccgcccacggcggtctc
                           
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 48 ; UGA-SECIS: 510

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431913378|gb|KB030552.1|:subseq_684800,269750_ Strand = - Positions = 676 - 602
 Found by:  Infernal (score=31.29) Covels (score=25.49)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -19.3

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((((.....{[[{((((({.(([((........-----..))]))})))))}]]}......-.)))))))))..
 target  CCGGGGGUUUUAUCCAUGAUGGUGUUUCCGCUAAACCUGC-----AAGGAGGUACACCUGAUGUCCAG-GAAAAUCCCCUG
                         ****            ^^^                       ****