------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431913378|gb|KB030552.1|:subseq_684800,269750_ Strand = - Positions = 676 - 602
 Found by:  Infernal (score=31.29) Covels (score=25.49)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -19.3

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((((.....{[[{((((({.(([((........-----..))]))})))))}]]}......-.)))))))))..
 target  CCGGGGGUUUUAUCCAUGAUGGUGUUUCCGCUAAACCUGC-----AAGGAGGUACACCUGAUGUCCAG-GAAAAUCCCCUG
                         ****            ^^^                       ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|431913378|gb|KB030552.1|:subseq_684800,269750_ Strand = + Positions = 239907 - 239979
 Found by:  Infernal (score=17.75) Covels (score=11.41)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 1, 0
 Free Energy = -10.1

         ..(((((((.......((((((((((((..(((...............))).))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc--ccuAAAcCcuuuuuggggcgg-gccaggcCuGAUGuu-u-uuucaugaccggc
         .({(((({(---(...([[{(((((((([(.(......-..-----...))]))))))))}]])......-..))}))))}).
 target  UGUCUACCU---UCCUUGAUGGGUCACAGCCACAAACC-CC-----UGCUGAUGUGGCCCUGAAACCCCC-CUGAUGUAGCCC
                         ****             ^^^                        ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431913378|gb|KB030552.1|:subseq_684800,269750_ Strand = + Positions = 265624 - 265715
 Found by:  Infernal (score=13.26)
 Stem2 length = 8   Apical loop length = 30   Insertion in stem2 = 0, 0
 Free Energy = -14.3

         ..(((((((........((((((((((((((..............................)))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggu-------------gggccaggcCuGAUGuuu-uuucaugaccggc
         ((([(((((........([[{(({(({((((..............................))))}))}))}]]).....-...)))))])))
 target  AAGACUGAGGGGAUUAAUGAUGGGCUAGGCAAGAGCCUCACCACCAGCACGUUGCCCACAAUGCCAGGGCCUGAGCACAG-CUGCUCAGGCUU
                          ****                                                  ****