------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431896833|gb|KB031032.1|:subseq_6128014,103000_ Strand = + Positions = 19278 - 19350
 Found by:  Infernal (score=28.58) Covels (score=26.4)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -11.3

         ..(((((((............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((((..........{[[{(({(((((((.........-----...)))))))}))}]]}----.)-)))))}))..
 target  GCUUCUUUUCAUAUUUGUUUAUGACGGCCACAGCUUAAAGUACA-----CACAGCUGUGACUUGAU----UU-GAAAAAAAUA
                              ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = gi|431896833|gb|KB031032.1|:subseq_6128014,103000_ Strand = + Positions = 73217 - 73289
 Found by:  Infernal (score=11.67) Covels (score=3.28)
 Stem2 length = 7   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -10.43

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(({(---(...{[[{((((({{({{(.................)}})}})))))}]]}----...))}))}))).
 target  GUGGCAGAU---CCCAUGACUCCUCUCUGAGAAACUGGAUGAAGAUGAUAGAAUGAGGAUGAC----AACGACCUUCCAA
                         ****           ^^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431896833|gb|KB031032.1|:subseq_6128014,103000_ Strand = + Positions = 67551 - 67639
 Found by:  Infernal (score=10.77) Covels (score=7.55)
 Stem2 length = 9   Apical loop length = 25   Insertion in stem2 = 0, 0
 Free Energy = -8.1

         ..(((((((.............(((((((((((((((.........................)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcC----------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((.............([[({(((({(((((.........................)))))}))))})]])----..-.))))))...
 target  GCUUCUCAAGCUCUAUUGCGGAUGAAAACCACCUGGAAAUCUUGUUAAAAUACAGAUUCUGAUUUAGUUGGUCUGAA----AA-GUUGAGAUUC
                               ****           ^^                                  ****