_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-34
 Query name: gi|260081569|gb|ACX31205.1| deiodinase 1 [Ovis aries]
 Query range: 1-146  (total 146)

 Target: /data/www-rg/seblastian_results/758805719/tempfiles/temptarget.fasta
 Chromosome: gi|431896833|gb|KB031032.1|:subseq_6128014,103000_ Strand: +
 Positions:
 -Exon 1  3285         3321
 -Exon 2  10848        10991
 -Exon 3  16259        16458
 -Exon 4  18322        18378

 Redox box: no

Query   SGERCSIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFIFKFDQFKRLIEEFGSVADFLIIYIEEAHASD <---Intron---> GWAFKNN
        ||/||/||||||| <   7526bp   > ||||||||||||||||/ ||||||/|||/| |/||||/|||||||||| <   5267bp   > |||||||
Target  SGQRCNIWDFMQG                NRPLVLNFGSCTUPSFLLKFDQFKKLIEDFSSIADFLVIYIEEAHASD                GWAFKNN
        tgcataatgtacg                aactgcatgatatcttctatgctaacaggtataggtcgatagggcgtg                gtgtaaa
        cgaggatgatta                gagctttatgggcgcctttataataattaatgctcattttataacacc                aggctaaa
        aaggcctgccga                ctaagggttattcatattgattacgattacttcaatttctctaaataa                tcgttgcc
                                                 *                                                          

Query   VDIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVLQEGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEK
        | |/||||||/||/|| /||||||||||||||||||||  ||||||||||||||||||| <   1863bp   > ||||||||||||| |||||
Target  VKIRNHRNLQERLQAARMLLDRSPQCPVVVDTMKNQSSHLYAALPERLYVLQEGRILYK                GKPGPWNYHPEEVHAVLEK
        gaaaaccaccgcccggcaccgaacctcggggaaaacaacctggccgactgccggaacta                gacgctatccgggcggcga
        tatgaagataagtaccgtttaggcagctttactaaaggatacctcagtattaaggttaa                gacgcgaaacaatacttaa
        gacgccgccgacggactgggcaccgctgggcaggcgcccccgagtggctgcggcgcccg                tatctgcttagattttgag
                                                                                                      
 Sequence until next stop: 
CTCCACAGTTAA
 L  H  S  * 

 Distance CDS-SECIS: 899 ; UGA-SECIS: 1259

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431896833|gb|KB031032.1|:subseq_6128014,103000_ Strand = + Positions = 19278 - 19350
 Found by:  Infernal (score=28.58) Covels (score=26.4)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -11.3

         ..(((((((............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((((..........{[[{(({(((((((.........-----...)))))))}))}]]}----.)-)))))}))..
 target  GCUUCUUUUCAUAUUUGUUUAUGACGGCCACAGCUUAAAGUACA-----CACAGCUGUGACUUGAU----UU-GAAAAAAAUA
                              ****           ^^^                       ****