------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|431908899|gb|KB030660.1|:subseq_18900000,350000_ Strand = - Positions = 27675 - 27596
 Found by:  Infernal (score=26.31) Covels (score=26.0)
 Stem2 length = 11   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -20.6

         ..(((((((.........((((((((((.(((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         (((((((((.........{[[{((((({.(([(((.......-----.)))]))})))))}]]}.........-...)))))))))
 target  CUCUGGGGGUCUCAUCCAUGAUGGUGUUUCCGCUAAACCUGC-----AUGGAGGUACACCUGAUGUCCAGGAA-AAUCCCCUGGGG
                           ****             ^^                       ****                      

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = gi|431908899|gb|KB030660.1|:subseq_18900000,350000_ Strand = - Positions = 128687 - 128623
 Found by:  Infernal (score=13.23)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 2
 Free Energy = -21.4

         ..(((((((.......(((((((((((((((..................)))))))..))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca--ggcCuGAUGuuuuuucaugaccggc
         .(((((([(---....{[[((((((({(((------(.....-----..))))}))..)))))]]}----....)])))))).
 target  GGCAGAGAG---AAAAUGAAGGCUGGUUCC------UGCGGA-----GAAGGACCCCGAGCUUGAU----CUAAUGCUCUGCG
                         ****                                          ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|431908899|gb|KB030660.1|:subseq_18900000,350000_ Strand = + Positions = 255530 - 255601
 Found by:  Infernal (score=11.27) Covels (score=10.52)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -10.36

         ..(((((((.........((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..(((({((.........{[[{({(((({((((......--------...))))}))))})}]]}..--....))}))))..
 target  UUGAUACUGUUACUAGGUUGAUGUUUGGAGGAGAAAAUG--------CCACUCCCCUAACCUGAUAU--CCUCCAUUAUCUC
                           ****           ^^^                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = gi|431908899|gb|KB030660.1|:subseq_18900000,350000_ Strand = - Positions = 176360 - 176287
 Found by:  Infernal (score=10.29) Covels (score=0.08)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -8.06

         ..(((((((..........(((((((((((((((.................))))))).))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ..((((((((.........([[({(((---(((((...............)))))---.)))})]])----...))))))))..
 target  CCUUCUUCCCCUCACCUCUUGAAAAUC---UUUUAAAUGAAAACCUAUGGUGAGA---GGAUCUGAA----ACAGGGAAGAGCA
                            ****            ^^                          ****