Command line: [exonerate -m p2g --showtargetgff -q ./SelW2.fa -t SelW2.carpeta/genomic.fa]
Hostname: [ws116037]

C4 Alignment:
------------
         Query: SPP00000127_2.0 # Protein # Selenoprotein W2 (SelW2) # Human (Homo sapiens)
        Target: gi|472267550|gb|KB717107.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02401, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 542
   Query range: 0 -> 115
  Target range: 18658 -> 19630

     1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGly :    20
         ||||||||||||||||||! !||||||! !||||||||||||! !|||:!!|||||||||
         MetSerGlyGluProGlyProThrSerGluAlaProProProGlyGluIleGluProGly
 18659 : ATGAGCGGGGAGCCGGGGCCGACGTCTGAAGCGCCCCCTCCCGGGGAAATTGAACCGGGT : 18716

    21 : SerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
         |||||||||||||||||||||||||||{||}            102 bp           
         SerGlyValArgIleValValGluTyr{Cy}++                         ++
 18717 : AGTGGGGTGCGCATCGTGGTGGAGTAC{TG}gt.........................ag : 18848

    31 : {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln :    49
         {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln
 18849 : {T}GAACCCTGCGGATTTGAGGCGACCTACCTGGAGCTGGCGAGTGCCGTGAAGGAGCAG : 18905

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
         |||||||||||||||||||||||||||||||||||||||{|}            446 bp
         TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++                
 18906 : TACCCCGGCATTGAGATCGAGTCGCGCCTGGGGGGCACA{G}gt................ : 18950

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {||}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 18951 : .........ag{GG}GCCTTTGAGATCGAAATCAATGGACAGCTGGTGTTCTCCAAGCTG : 19438

    79 : GluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron 3 >>>>  L :    89
         ||||||||||||||||||||||||||||||            79 bp            |
         GluAsnGlyGlyPheProTyrGluLysAsp++                         ++L
 19439 : GAGAATGGGGGCTTCCCTTATGAGAAAGATgt.........................agC : 19550

    90 : euIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLysIleThrAsnSerA :   109
         ||||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
         euIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIleThrAsnSerA
 19551 : TCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAACCCCTGGAAAAGATCACGAACAGCC : 19610

   110 : rgProProCysValIleLeu :   115
         ||||||||||||||||||||
         rgProProCysValIleLeu
 19611 : GTCCTCCCTGCGTCATCCTG : 19630

vulgar: SPP00000127_2.0 0 115 . gi|472267550|gb|KB717107.1| 18658 19630 + 542 M 29 87 S 0 2 5 0 2 I 0 98 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 442 3 0 2 S 1 2 M 25 75 5 0 2 I 0 75 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	gene	18659	19630	542	+	.	gene_id 1 ; sequence SPP00000127_2.0 ; gene_orientation +
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	cds	18659	18747	.	+	.	
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	exon	18659	18747	.	+	.	insertions 0 ; deletions 0
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice5	18748	18749	.	+	.	intron_id 1 ; splice_site "GT"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	intron	18748	18849	.	+	.	intron_id 1
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice3	18848	18849	.	+	.	intron_id 0 ; splice_site "AG"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	cds	18850	18947	.	+	.	
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	exon	18850	18947	.	+	.	insertions 0 ; deletions 0
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice5	18948	18949	.	+	.	intron_id 2 ; splice_site "GT"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	intron	18948	19393	.	+	.	intron_id 2
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice3	19392	19393	.	+	.	intron_id 1 ; splice_site "AG"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	cds	19394	19470	.	+	.	
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	exon	19394	19470	.	+	.	insertions 0 ; deletions 0
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice5	19471	19472	.	+	.	intron_id 3 ; splice_site "GT"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	intron	19471	19549	.	+	.	intron_id 3
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	splice3	19548	19549	.	+	.	intron_id 2 ; splice_site "AG"
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	cds	19550	19630	.	+	.	
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	exon	19550	19630	.	+	.	insertions 0 ; deletions 0
gi|472267550|gb|KB717107.1|	exonerate:protein2genome:local	similarity	18659	19630	542	+	.	alignment_id 1 ; Query SPP00000127_2.0 ; Align 18659 1 87 ; Align 18851 31 96 ; Align 19396 64 75 ; Align 19550 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis