TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000127_2.0 # Protein # Selenoprotein W2 (SelW2) # Human
(Homo sapiens)
         (115 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472267550|gb|KB717107.1| Leptonychotes weddellii isolate WS11...    86   9e-18

>gi|472267550|gb|KB717107.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold02401, whole genome
             shotgun sequence
          Length = 401892

 Score = 85.5 bits (210), Expect = 5e-16
 Identities = 52/97 (53%), Positives = 52/97 (53%), Gaps = 34/97 (35%)
 Frame = +2

Query: 1     MSGEPGQTSVAXXXXXXXXGSGVRIVVEY------------------------------- 29
             MSGEPG TS A        GSGVRIVVEY                               
Sbjct: 18659 MSGEPGPTSEAPPPGEIEPGSGVRIVVEYW*ASPACGVSGPNGGGSTGGPSPETQAEPKR 18838

Query: 30    ---CEPCGFEATYLELASAVKEQYPGIEIESRLGGTG 63
                 EPCGFEATYLELASAVKEQYPGIEIESRLGGTG
Sbjct: 18839 LVPSEPCGFEATYLELASAVKEQYPGIEIESRLGGTG 18949



 Score = 57.8 bits (138), Expect(2) = 9e-18
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +1

Query: 63    GAFEIEINGQLVFSKLENGGFPYEKDL 89
             GAFEIEINGQLVFSKLENGGFPYEKD+
Sbjct: 19393 GAFEIEINGQLVFSKLENGGFPYEKDV 19473



 Score = 53.9 bits (128), Expect(2) = 9e-18
 Identities = 26/27 (96%), Positives = 26/27 (96%)
 Frame = +2

Query: 89    LIEAIRRASNGETLEKITNSRPPCVIL 115
             LIEAIRRASNGE LEKITNSRPPCVIL
Sbjct: 19550 LIEAIRRASNGEPLEKITNSRPPCVIL 19630


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.314    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,414,324
Number of Sequences: 16710
Number of extensions: 3450906
Number of successful extensions: 7357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 6981
Number of HSP's gapped (non-prelim): 720
length of query: 115
length of database: 1,052,295,386
effective HSP length: 90
effective length of query: 25
effective length of database: 1,050,791,486
effective search space: 26269787150
effective search space used: 26269787150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)