Command line: [exonerate -m p2g --showtargetgff -q ./SelW1.fa -t SelW1.carpeta/genomic.fa] Hostname: [ws101093] C4 Alignment: ------------ Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human (Homo sapiens) Target: gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05689, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 334 Query range: 16 -> 87 Target range: 44579 -> 44094 17 : SerLysTyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIle : 36 |||:!!|||||||||||||||||||||||||||||||||||||||||| !!||||||||| SerGlnTyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyCysLeuAspIle 44579 : TCCCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGATGAGTTCCCCGGATGCCTGGACATC : 44522 37 : >>>> Target Intron 1 >>>> CysGlyGluGlyThrProGlnAlaThrGlyP : 47 184 bp ||||||||||||||||||||||||||||||| ++ ++CysGlyGluGlyThrProGlnAlaThrGlyP 44521 : gt.........................agTGCGGCGAGGGGACTCCCCAGGCCACCGGCT : 44305 48 : hePheGluValMetValAlaGlyLysLeuIleHisSerLysLys >>>> Target In : 62 |||||||||||||||||||||||||||||:!!|||||||||||| 88 b hePheGluValMetValAlaGlyLysLeuValHisSerLysLys++ 44304 : TCTTTGAAGTGATGGTAGCCGGGAAGTTGGTTCACTCCAAGAAGgt.............. : 44258 63 : tron 2 >>>> LysGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuVa : 77 p !:!|||||||||||||||||||||||||||||||||||||||||||| ++ArgGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuVa 44257 : ...........agAGAGGTGATGGCTACGTGGACACAGAGAGCAAGTTTCTGAAGCTGGT : 44127 78 : lAlaAlaIleLysAlaAlaLeuAlaGlnGly : 87 ||||||||||||||||||||||||||||||| lAlaAlaIleLysAlaAlaLeuAlaGlnGly 44126 : GGCCGCCATCAAGGCCGCCTTGGCTCAGGGC : 44095 vulgar: SPP00000124_2.0 16 87 . gi|472264263|gb|KB720394.1| 44579 44094 - 334 M 20 60 5 0 2 I 0 180 3 0 2 M 25 75 5 0 2 I 0 84 3 0 2 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-14 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472264263|gb|KB720394.1| exonerate:protein2genome:local gene 44095 44579 334 - . gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation + gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44520 44579 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44520 44579 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice5 44518 44519 . - . intron_id 1 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local intron 44336 44519 . - . intron_id 1 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice3 44336 44337 . - . intron_id 0 ; splice_site "AG" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44261 44335 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44261 44335 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice5 44259 44260 . - . intron_id 2 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local intron 44173 44260 . - . intron_id 2 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice3 44173 44174 . - . intron_id 1 ; splice_site "AG" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44095 44172 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44095 44172 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local similarity 44095 44579 334 - . alignment_id 1 ; Query SPP00000124_2.0 ; Align 44580 17 60 ; Align 44336 37 75 ; Align 44173 62 78 # --- END OF GFF DUMP --- # -- completed exonerate analysis