Command line: [exonerate -m p2g --showtargetgff -q ./SelW1.fa -t SelW1.carpeta/genomic.fa]
Hostname: [ws101093]

C4 Alignment:
------------
         Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human (Homo sapiens)
        Target: gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05689, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 334
   Query range: 16 -> 87
  Target range: 44579 -> 44094

    17 : SerLysTyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIle :    36
         |||:!!|||||||||||||||||||||||||||||||||||||||||| !!|||||||||
         SerGlnTyrLeuGlnLeuLysLysLysLeuGluAspGluPheProGlyCysLeuAspIle
 44579 : TCCCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGATGAGTTCCCCGGATGCCTGGACATC : 44522

    37 :   >>>> Target Intron 1 >>>>  CysGlyGluGlyThrProGlnAlaThrGlyP :    47
                     184 bp           |||||||||||||||||||||||||||||||
         ++                         ++CysGlyGluGlyThrProGlnAlaThrGlyP
 44521 : gt.........................agTGCGGCGAGGGGACTCCCCAGGCCACCGGCT : 44305

    48 : hePheGluValMetValAlaGlyLysLeuIleHisSerLysLys  >>>> Target In :    62
         |||||||||||||||||||||||||||||:!!||||||||||||            88 b
         hePheGluValMetValAlaGlyLysLeuValHisSerLysLys++              
 44304 : TCTTTGAAGTGATGGTAGCCGGGAAGTTGGTTCACTCCAAGAAGgt.............. : 44258

    63 : tron 2 >>>>  LysGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuVa :    77
         p            !:!||||||||||||||||||||||||||||||||||||||||||||
                    ++ArgGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuVa
 44257 : ...........agAGAGGTGATGGCTACGTGGACACAGAGAGCAAGTTTCTGAAGCTGGT : 44127

    78 : lAlaAlaIleLysAlaAlaLeuAlaGlnGly :    87
         |||||||||||||||||||||||||||||||
         lAlaAlaIleLysAlaAlaLeuAlaGlnGly
 44126 : GGCCGCCATCAAGGCCGCCTTGGCTCAGGGC : 44095

vulgar: SPP00000124_2.0 16 87 . gi|472264263|gb|KB720394.1| 44579 44094 - 334 M 20 60 5 0 2 I 0 180 3 0 2 M 25 75 5 0 2 I 0 84 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	gene	44095	44579	334	-	.	gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation +
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44520	44579	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44520	44579	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice5	44518	44519	.	-	.	intron_id 1 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	intron	44336	44519	.	-	.	intron_id 1
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice3	44336	44337	.	-	.	intron_id 0 ; splice_site "AG"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44261	44335	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44261	44335	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice5	44259	44260	.	-	.	intron_id 2 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	intron	44173	44260	.	-	.	intron_id 2
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice3	44173	44174	.	-	.	intron_id 1 ; splice_site "AG"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44095	44172	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44095	44172	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	similarity	44095	44579	334	-	.	alignment_id 1 ; Query SPP00000124_2.0 ; Align 44580 17 60 ; Align 44336 37 75 ; Align 44173 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis