TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human
(Homo sapiens)
         (87 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11...    55   2e-08
gi|472269297|gb|KB715360.1| Leptonychotes weddellii isolate WS11...    40   5e-04
gi|472267158|gb|KB717499.1| Leptonychotes weddellii isolate WS11...    33   0.011
gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11...    34   1.8  

>gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold05689, whole genome
             shotgun sequence
          Length = 63620

 Score = 55.5 bits (132), Expect(2) = 2e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 37    CGEGTPQATGFFEVMVAGKLIHSKK 61
             CGEGTPQATGFFEVMVAGKL+HSKK
Sbjct: 44335 CGEGTPQATGFFEVMVAGKLVHSKK 44261



 Score = 24.6 bits (52), Expect(2) = 2e-08
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 61    KKGDGYVDTES 71
             ++GDGYVDTES
Sbjct: 44175 QRGDGYVDTES 44143


>gi|472269297|gb|KB715360.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00654, whole genome
              shotgun sequence
          Length = 1030148

 Score = 40.4 bits (93), Expect(2) = 5e-04
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = -3

Query: 29     EFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTES 71
              + PG   I GEG P ATGFFEVM  G      ++GDGY+D ES
Sbjct: 689988 QLPG---IYGEGIPLATGFFEVMEWGSWF-IPRRGDGYMDMES 689872



 Score = 24.3 bits (51), Expect(2) = 5e-04
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 1      MALAVRVVYCGAUG 14
              MALA +VVYCGA G
Sbjct: 690077 MALANQVVYCGA*G 690036


>gi|472267158|gb|KB717499.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold02793, whole genome
             shotgun sequence
          Length = 352559

 Score = 33.1 bits (74), Expect(2) = 0.011
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +3

Query: 2     ALAVRVVYCGAUGXXXXXXXXXXXXEDEFPGRLDICGEG 40
             A  V VVYCG+ G            EDEFP  LDICG+G
Sbjct: 29640 APTVTVVYCGS*GYECWYPKLKKV-EDEFPRCLDICGKG 29753



 Score = 26.9 bits (58), Expect(2) = 0.011
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 43    QATGFFEVMVAGKLIHSKKKGDGYVDTES 71
             +ATGFFEV           +GDGYV TES
Sbjct: 29749 RATGFFEV----------NRGDGYVVTES 29805


>gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01649, whole genome
              shotgun sequence
          Length = 595937

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +2

Query: 39     EGTPQATGFFEVMVAGKLIHSKK 61
              E   QATG FEV V GKL+HSKK
Sbjct: 124679 ERAAQATGEFEVFVDGKLVHSKK 124747


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.318    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,056,254
Number of Sequences: 16710
Number of extensions: 1518563
Number of successful extensions: 4063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3920
Number of HSP's gapped (non-prelim): 247
length of query: 87
length of database: 1,052,295,386
effective HSP length: 62
effective length of query: 25
effective length of database: 1,051,259,366
effective search space: 26281484150
effective search space used: 26281484150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)