Command line: [exonerate -m p2g --showtargetgff -q ./SelV.fa -t SelV.carpeta/genomic.fa]
Hostname: [ws101074]
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens)
Target: gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01649, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 649
Query range: 0 -> 346
Target range: 121555 -> 124943
1 : MetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerValA : 20
||||||||||||||||||.!!|||:!!||| ||||||! !|||||||||||||
MetAsnAsnGlnAlaArgAlaProSerPro------AlaArgMetSerThrSerValA
121556 : ATGAACAACCAGGCGAGGGCCCCTTCCCCG------GCCCGGATGTCGACCTCGGTCC : 121607
21 : rgAlaSerThrProThrArgThrProThrProLeuArgThr{Pr} >>>> Target : 34
|||||||||||||| !|||||| !!||| !! !||||||{||} 3
rgAlaSerThrProGlyArgThrSerThrSerAlaArgThr{Pr}+-
121608 : GGGCTTCAACCCCAGGCAGGACCTCGACTTCGGCCCGGACC{CC}ga........... : 121653
35 : Intron 1 >>>> {o}ThrProValArgThrArgThrProIleArgThrLeuThr : 47
78 bp {|}|||! !!.!||||||! !||||||:!!!:!|||! !.!!
-+{o}ThrLeuAlaArgThrProThrProValGlnThrGlnAla
121654 : ..............cg{G}ACCCTGGCCCGGACCCCGACTCCTGTCCAGACCCAGGCC : 122066
48 : ProValLeuThrProSerProAlaGlyThrSerProLeuValLeuThrPro<-><->< : 65
!!.!! !||||||!:!|||::! !||| ! !!! !:!!|||!.!|||
LeuAlaTrpThrProAsnProSerGlnThrLeuAlaArgIleLeuAsnProValGlnM
122067 : TTGGCCTGGACCCCGAATCCCAGCCAGACCCTGGCCCGGATCCTGAATCCAGTCCAGA : 122126
66 : -><->AlaProAlaGlnIleProThrLeuValProThrProAlaLeuAlaArgIlePr : 82
.!!|||||||||! !||||||! !:!!||||||||||||! !||| !!! !||
etLeuThrProAlaGlnThrProThrProIleProThrProAlaSerAlaTrpThrPr
122127 : TGCTGACCCCGGCCCAAACCCCGACTCCCATCCCGACCCCGGCCTCCGCCTGGACCCC : 122183
83 : oArgLeuValProProProAlaProAlaTrpIleProThrProValProThrProVal : 101
|! !! !|||! ! !!! !||| !!||||||! !|||||| !!:!!! !||||||..!
oThrProValGlnThrLeuAlaSerAlaTrpThrProThrSerIleGlnThrProThr
122184 : CACTCCCGTCCAGACCCTGGCCTCGGCCTGGACCCCCACTTCCATCCAGACCCCAACC : 122240
102 : ProValArgAsnProThrProValProThrProAlaArgThrLeuThrProProValA : 121
|||||| !!!.!! !|||||||||! !|||! !.!!|||! !! !|||||| !! !
ProValTrpThrArgThrProValArgThrLeuThrArgIleArgThrProThrProA
122241 : CCGGTCTGGACCCGCACTCCCGTCCGGACTCTGACCCGGATCCGGACCCCGACTCCTG : 122300
122 : rg{V} >>>> Target Intron 2 >>>> {al}ProAlaProAlaProAlaGl : 129
!{ } 75 bp { !}|||.!!|||!.!|||:!!!:
la{P}+- -+{ro}ProThrProValProSerAr
122301 : CA{C}gg.........................gg{CC}CCAACTCCAGTTCCATCCCG : 122399
130 : nLeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAla : 148
!:!! ! !! !|||! !||||||:!!|||!.!! !!!:|||!:!! !! ! !!!.!
gValGlyIleGluIleThrAlaAlaValProAlaSerGluSerPheProAspSerVal
122400 : GGTTGGGATTGAGATCACAGCCGCGGTCCCTGCCTCGGAATCCTTCCCGGACTCAGTC : 122456
149 : LeuProLeuAspProProProGluProAla<->ProGluLeuProLeuLeuProGluG : 167
|||||||||||||||! !|||||||||||| !||| ! !!|||! !|||!!::
LeuProLeuAspProHisProGluProAlaLeuGluGluAlaAlaLeuSerProAspL
122457 : CTGCCTTTGGATCCGCACCCAGAACCCGCTTTGGAGGAGGCCGCTTTGTCGCCCGACA : 122516
168 : luAspProGluProAlaProSerLeuLysLeuIleProSerValSerSerGluAlaGl : 186
!!|||! !..!||| !||||||:!!|||! !.!!||||||! !:!!|||! ! !||
ysAspLeuSerProLysProSerValLysHisPheProSerAspAlaSerGlyPheGl
122517 : AGGATCTTTCGCCCAAGCCGAGCGTGAAGCACTTCCCATCCGACGCCAGTGGATTCGG : 122573
187 : yProAlaProGlyProLeuProThrArgThrProLeuAlaAlaAsnSerProGlyPro : 205
| !! !! !! ! !!:!!! !..!!.!||||||! !|||.!!:!!! !! !|||! !
ySerLysGlnGluSerValLeuValHisThrProSerAlaThrAspPheLeuGlyLeu
122574 : GTCCAAGCAAGAGTCCGTTCTTGTCCACACTCCATCGGCCACTGATTTCCTGGGGCTC : 122630
206 : ThrLeuAspPheThrPheArgAlaAspProSerAlaIleGlyLeuAlaAspProProI : 225
||||||! !! !|||! ||||||||| !!||||||! !|||.!!||| !!!
ThrLeuGlySerThrSerArgAlaAspSerSerAlaThrLysLeuThrAsp---SerT
122631 : ACCCTTGGCTCCACCTCGAGGGCAGACTCCTCGGCCACGAAGTTGACAGAT---TCCA : 122687
226 : leProSerProValProSerProIleLeuGlyThrIleProSerAlaIleSerLeuGl : 244
!|||..! !|||||| !|||||||||||| !! !|||! !||| !!!!|||!
hrProGluPheValProValProIleLeuGlyProAspProPheAlaProThrLeuPr
122688 : CTCCCGAGTTTGTTCCGGTGCCCATCCTGGGTCCCGACCCGTTCGCCCCCACCTTACC : 122744
245 : nAsnCysThrGluThrPheProSerSerSerGluAsnPheAlaLeuAspLysArgVal : 263
.!.! !|||.!.|||||| !! !!!!!! !|||!:!||| !!:!!|||!..!:!:!!
oGluSerThrAsnThrPheThrProThrIleGluSerPheProMetAspSerLysIle
122745 : TGAGTCCACCAACACTTTCACTCCCACCATTGAGAGCTTCCCGATGGACAGCAAGATC : 122801
264 : LeuIleArgValThrTyr{Cy} >>>> Target Intron 3 >>>> {s}GlyL : 272
:!!|||||||||! !|||{||} 1677 bp {|} !:
ValIleArgValIleTyr{Cy}++ +-{s}ProI
122802 : GTGATTCGAGTGATCTAC{TG}gt.........................aa{T}CCCA : 124505
273 : euUnkSerTyrSerLeuArgTyrIleLeuLeuLysLysSerLeuGluGlnGlnPhePr : 291
!!... !!!|||!:!!:!|||||||||!:!|||||||||||||||||||||||
leSer------ThrLeuGlnPheIleLeuLeuArgLysSerLeuGluGlnGlnPhePr
124506 : TCTCC------ACTCTGCAGTTCATTCTACTGAGAAAGAGTCTGGAGCAGCAATTTCC : 124556
292 : oAsnHisLeuLeuPhe >>>> Target Intron 4 >>>> GluGluAspArgA : 301
||||!..||||||||| 99 bp :!!|||!!:||||
oAsnArgLeuLeuPhe++ ++GlnGluGluArgA
124557 : AAATCGACTTCTCTTTgt.........................agCAGGAGGAAAGAG : 124685
302 : laAlaGlnAlaThrGlyGluPheGluValPheValAsnGlyArgLeuValHisSerLy : 320
|||||||||||||||||||||||||||||||||||:!!|||!:!||||||||||||||
laAlaGlnAlaThrGlyGluPheGluValPheValAspGlyLysLeuValHisSerLy
124686 : CTGCCCAGGCTACAGGGGAGTTTGAAGTGTTTGTGGATGGGAAACTGGTCCATTCAAA : 124742
321 : sLys >>>> Target Intron 5 >>>> ArgGlyAspGlyPheValAsnGluS : 330
|||| 121 bp !:!|||||||||||||||:!!|||:
sLys++ ++LysGlyAspGlyPheValAspGluA
124743 : GAAGgt.........................agAAAGGTGATGGCTTTGTGGATGAGG : 124893
331 : erArgLeuGlnLysIleValSerValIleAspGluGluIleLysLysArg : 346
!!|||||||||||||||:!!|||:!!|||!!:|||||||||!..||||||
laArgLeuGlnLysIleMetSerIleIleGluGluGluIleSerLysArg
124894 : CCAGGCTGCAGAAAATTATGAGCATTATCGAGGAGGAGATCAGCAAAAGG : 124943
vulgar: SPP00000123_2.0 0 346 . gi|472268302|gb|KB716355.1| 121555 124943 + 649 M 10 30 G 2 0 M 21 63 S 0 2 5 0 2 I 0 374 3 0 2 S 1 1 M 30 90 G 0 12 M 57 171 S 0 1 5 0 2 I 0 71 3 0 2 S 1 2 M 36 108 G 0 3 M 64 192 G 1 0 M 46 138 S 0 2 5 0 2 I 0 1673 3 0 2 S 1 1 M 3 9 G 2 0 M 21 63 5 0 2 I 0 95 3 0 2 M 25 75 5 0 2 I 0 117 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-13
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local gene 121556 124943 649 + . gene_id 1 ; sequence SPP00000123_2.0 ; gene_orientation +
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 121556 121650 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 121556 121650 . + . insertions 0 ; deletions 2
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 121651 121652 . + . intron_id 1 ; splice_site "GA"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 121651 122028 . + . intron_id 1
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 122027 122028 . + . intron_id 0 ; splice_site "CG"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 122029 122303 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 122029 122303 . + . insertions 12 ; deletions 0
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 122304 122305 . + . intron_id 2 ; splice_site "GG"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 122304 122378 . + . intron_id 2
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 122377 122378 . + . intron_id 1 ; splice_site "GG"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 122379 122823 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 122379 122823 . + . insertions 3 ; deletions 1
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 122824 122825 . + . intron_id 3 ; splice_site "GT"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 122824 124500 . + . intron_id 3
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 124499 124500 . + . intron_id 2 ; splice_site "AA"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 124501 124573 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 124501 124573 . + . insertions 0 ; deletions 2
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 124574 124575 . + . intron_id 4 ; splice_site "GT"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 124574 124672 . + . intron_id 4
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 124671 124672 . + . intron_id 3 ; splice_site "AG"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 124673 124747 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 124673 124747 . + . insertions 0 ; deletions 0
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 124748 124749 . + . intron_id 5 ; splice_site "GT"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 124748 124868 . + . intron_id 5
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 124867 124868 . + . intron_id 4 ; splice_site "AG"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 124869 124943 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 124869 124943 . + . insertions 0 ; deletions 0
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local similarity 121556 124943 649 + . alignment_id 1 ; Query SPP00000123_2.0 ; Align 121556 1 30 ; Align 121586 13 63 ; Align 122030 35 90 ; Align 122132 65 171 ; Align 122381 123 108 ; Align 122492 159 192 ; Align 122684 224 138 ; Align 124502 271 9 ; Align 124511 276 63 ; Align 124673 297 75 ; Align 124869 322 75
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens)
Target: gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01649, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 177
Query range: 31 -> 241
Target range: 121570 -> 122194
32 : ArgThrProThrProValArgThrArgThrProIleArgThrLeuThrProValLeuT : 51
|||.!!|||:!!|||!.!|||! ! !||| !!:!!|||.!!! !||||||! ! !|
ArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyArgT
121571 : AGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAGGA : 121628
52 : hrProSerProAlaGlyThrSerProLeuValLeuThrProAlaProAlaGlnIlePr : 70
|| !!!!! !!||| !!||| !! ! !|||! !! !! !.!!! !.!!!:!! !||
hrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrPr
121629 : CCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCC : 121685
71 : oThrLeuValProThrProAlaLeuAlaArgIleProArgLeuValProProProAla : 89
||||! !|||||||||! !|||! !.!!! !! !||| |||! ! !!||| !
oThrProValProThrArgAlaTrpThrProThrPro------ValGlnAlaProIle
121686 : GACTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCC------GTCCAGGCCCCGATC : 121736
90 : ProAlaTrpIleProThrProValProThrProValProValArgAsnProThrProV : 109
!!||||||! !||||||||||||! !.!!|||!.! !!!.! !! !||||||||||
SerAlaTrpThrProThrProValArgAlaProAlaSerAlaTrpAlaProThrProV
121737 : TCGGCCTGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCG : 121796
110 : alProThrProAlaArgThrLeuThrProProValArgValProAlaProAlaProAl : 128
||! !||||||||||||||||||.!! ||||||! !..!! !|||! !.!!|||.!
alGlnThrProAlaArgThrLeuAla---ProValProThrLeuAlaArgThrProTh
121797 : TCCAGACCCCGGCGCGAACCCTGGCT---CCCGTCCCGACCCTGGCCCGGACCCCGAC : 121850
129 : aGlnLeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaPro : 147
!!:::!!! !.!! !! ! !||| ! !|||..!! !! !..! !! !||| !!
rArgIleGlnThrLeuThrSerAlaArgThrProThrProAlaGlnThrArgAlaSer
121851 : TCGCATCCAGACCCTGACCTCCGCCCGGACCCCGACTCCTGCCCAGACCCGGGCCTCA : 121907
148 : AlaLeu----ProLeuAspProProProGluProAlaProGluLeuProLeuLeuPro : 165
|||! !####|||||| !! !! !..!|||!.!||| !|||! !! ! !|||
AlaArg####ProLeuProSerArgLeuArgProGlyProProLeuLeuSerArgPro
121908 : GCTCGGACCCCCACTCCCGTCCAGACTCCGGCCTGGACCCCCACTCCTGTCCAGACCC : 121965
166 : GluGluAspProGluProAlaProSerLeuLysLeuIleProSerValSerSerGluA : 185
:!! |||! !|||.!!! ! !!! !!:!! ! |||..! ! !! ! !:
GlnProArgProGlyProThrLeuProSerArgProArgProGluProArgLeuProS
121966 : CAGCCTCGGCCTGGACCCACACTCCCATCCAGACCCCGGCCCGAGCCCCGGCTCCCGT : 122025
186 : laGlyProAlaProGly--ProLeuProThrArgThrProLeuAlaAlaAsnSerPro : 203
!!|||||| !||||||##||| !|||..!!:!|||! ! ! !||| !!!|||
erGlyProTrpProGly##ProThrProValGlnThrGlnAlaLeuAlaTrpThrPro
122026 : CCGGACCCTGGCCCGGACCCCGACTCCTGTCCAGACCCAGGCCTTGGCCTGGACCCCG : 122081
204 : GlyProThrLeuAspPheThrPheArgAlaAspProSerAlaIleGlyLeuAlaAspP : 223
..!|||!:!! ! !.!..!! ! ! !:!!||| ! !!!: |||.!!
AsnProSerGlnThrLeuAlaArgIleLeuAsnProValGlnMet---LeuThrProA
122082 : AATCCCAGCCAGACCCTGGCCCGGATCCTGAATCCAGTCCAGATG---CTGACCCCGG : 122138
224 : roProIleProSerProValProSerProIleLeuGlyThrIleProSerAlaIle : 241
!!! !! !|||!!!|||:!!|||!!!||| !! !!.! !! !|||!!! !!:!!
laGlnThrProThrProIleProThrProAlaSerAlaTrpThrProThrProVal
122139 : CCCAAACCCCGACTCCCATCCCGACCCCGGCCTCCGCCTGGACCCCCACTCCCGTC : 122194
vulgar: SPP00000123_2.0 31 241 . gi|472268302|gb|KB716355.1| 121570 122194 + 177 M 51 153 G 2 0 M 33 99 G 1 0 M 31 93 F 0 4 M 41 123 F 0 2 M 28 84 G 1 0 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-13
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local gene 121571 122194 177 + . gene_id 2 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 121571 122194 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 121571 122194 . + . insertions 0 ; deletions 4 ; frameshifts 6
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local similarity 121571 122194 177 + . alignment_id 2 ; Query SPP00000123_2.0 ; Align 121571 32 153 ; Align 121724 85 99 ; Align 121823 119 93 ; Align 121920 150 123 ; Align 122045 191 84 ; Align 122129 220 66
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens)
Target: gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01649, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 111
Query range: 6 -> 215
Target range: 19433 -> 122094
7 : ThrProAlaProSerSerAlaArgThrSer >>>> Target Intron 1 >>>> : 17
!:!||||||||||||||| !||| !||| 102026 bp
SerProAlaProSerSerPheArgGlySer++ +
19434 : AGCCCTGCCCCGTCATCCTTCCGTGGGAGCgt.........................a : 121488
18 : ThrSerValArgAlaSerThrProThrArgThrProThrProLeuArgThrProThr : 35
!!!! !! !!.!..! !||||||! ! !||| ! !! ! !! !||| !!
-GlyArgSerThrGlyGlnAspProThrProHisProArgTyrProGlyGlyProPro
121489 : aGGAAGGAGCACCGGGCAGGATCCCACCCCCCACCCCCGTTACCCCGGGGGGCCCCCT : 121544
36 : ProValArgThrArgThrProIleArgThrLeuThrProValLeuThrProSerProA : 55
!! !! !! !!.!!.!! ! |||.!!! !:!!|||!.!! !! ! !!!!! !!!
AlaProThrMetAsnAsnGlnAlaArgAlaProSerProAlaArgMetSerThrSerV
121545 : GCCCCCACCATGAACAACCAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGG : 121604
56 : laGlyThrSerProLeuValLeuThrProAlaProAlaGlnIleProThrLeuValPr : 74
.! !!.!!||| !!! !! ! !||| !!.!! !!|||!:!! !|||! ! !|||!
alArgAlaSerThrProGlyArgThrSerThrSerAlaArgThrProLysAlaValGl
121605 : TCCGGGCTTCAACCCCAGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCA : 121661
75 : oThrProAlaLeuAlaArgIleProArgLeuValProProProAlaProAlaTrpIle : 93
!! !! !.!!! !.!!|||! !|||! !! !|||||| .!!! !||||||! !
nIleLeuThrArgThrArgThrProThrProValPro------ThrArgAlaTrpThr
121662 : GATCCTGACCCGCACCCGGACCCCGACTCCCGTCCCC------ACCCGGGCCTGGACC : 121712
94 : ProThrProValProThrProValProValArgAsnProThrProValProThrProA : 113
||||||||||||! !.!!|||:!! !!!.! !!!.!||||||||||||! !.!!||||
ProThrProValGlnAlaProIleSerAlaTrpThrProThrProValArgAlaProA
121713 : CCGACTCCCGTCCAGGCCCCGATCTCGGCCTGGACCCCGACTCCCGTCCGGGCCCCAG : 121772
114 : laArgThrLeuThrPro<->ProValArgValProAlaPro<-><->AlaProAlaGl : 129
|| !.!!! !.!!||| ||||||!:!..!||||||! ! ||||||!.!!
laSerAlaTrpAlaProThrProValGlnThrProAlaArgThrLeuAlaProValPr
121773 : CCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCGAACCCTGGCTCCCGTCCC : 121829
130 : nLeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAla : 148
! !|||||| !!! !! !.!! !:!!! !..!||| !||| !! !.!!|||.!!
oThrLeuAlaArgThrProThrArgIleGlnThrLeuThrSerAlaArgThrProThr
121830 : GACCCTGGCCCGGACCCCGACTCGCATCCAGACCCTGACCTCCGCCCGGACCCCGACT : 121886
149 : LeuProLeuAspProProProGluProAlaProGluLeuProLeuLeuProGluGluA : 168
! ! !!! ! !! ! !! !!! ! !.!!||| ! ! !! ! !|||! !
ProAlaGlnThrArgAlaSerAlaArgThrProThrProValGlnThrProAlaTrpT
121887 : CCTGCCCAGACCCGGGCCTCAGCTCGGACCCCCACTCCCGTCCAGACTCCGGCCTGGA : 121946
169 : spProGluProAla-----ProSerLeuLysLeuIleProSerValSerSerGluAla : 185
!||| |||!.!#####||||||||| ||| !||| ! ! ! !!!!: !!
hrProThrProVal#####ProSerLeuGlyLeuAspProHisSerHisProAspPro
121947 : CCCCCACTCCTGTCCAGACCCCAGCCTCGGCCTGGACCCACACTCCCATCCAGACCCC : 122002
186 : GlyProAlaProGlyProLeuProThrArgThrProLeuAlaAlaAsnSerProGlyP : 205
||||||::!|||||| !!! !||| !! ! !||| ! !!! !::!!!!|||! !|
GlyProSerProGlySerArgProAspProGlyProAspProAspSerCysProAspP
122003 : GGCCCGAGCCCCGGCTCCCGTCCGGACCCTGGCCCGGACCCCGACTCCTGTCCAGACC : 122062
206 : roThrLeuAspPheThrPheArgAlaAspPro : 215
|| !|||! !.!. ! !..!:!!.!.|||
roGlyLeuGlyLeuAspProGluSerGlnPro
122063 : CAGGCCTTGGCCTGGACCCCGAATCCCAGCCA : 122094
vulgar: SPP00000123_2.0 6 215 . gi|472268302|gb|KB716355.1| 19433 122094 + 111 M 10 30 5 0 2 I 0 102022 3 0 2 M 70 210 G 2 0 M 30 90 G 0 3 M 7 21 G 0 6 M 47 141 F 0 5 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-13
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local gene 19434 122094 111 + . gene_id 3 ; sequence SPP00000123_2.0 ; gene_orientation +
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 19434 19463 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 19434 19463 . + . insertions 0 ; deletions 0
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice5 19464 19465 . + . intron_id 1 ; splice_site "GT"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local intron 19464 121489 . + . intron_id 1
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local splice3 121488 121489 . + . intron_id 0 ; splice_site "AA"
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local cds 121490 122094 . + .
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local exon 121490 122094 . + . insertions 9 ; deletions 2 ; frameshifts 5
gi|472268302|gb|KB716355.1| exonerate:protein2genome:local similarity 19434 122094 111 + . alignment_id 3 ; Query SPP00000123_2.0 ; Align 19434 7 30 ; Align 121490 17 210 ; Align 121700 89 90 ; Align 121793 119 21 ; Align 121820 126 141 ; Align 121966 173 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis