TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens) (346 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11... 63 5e-15 gi|472266012|gb|KB718645.1| Leptonychotes weddellii isolate WS11... 38 0.83 gi|472264461|gb|KB720196.1| Leptonychotes weddellii isolate WS11... 36 4.1 gi|472268816|gb|KB715841.1| Leptonychotes weddellii isolate WS11... 35 9.2 >gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01649, whole genome shotgun sequence Length = 595937 Score = 62.8 bits (151), Expect(2) = 5e-15 Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 33/79 (41%) Frame = +2 Query: 276 SLRYILLKKSLEQQFPNHLLF---------------------------------EEDRAA 302 +L++ILL+KSLEQQFPN LLF +E+RAA Sbjct: 124511 TLQFILLRKSLEQQFPNRLLFVSGLGEVAGQGSETPGAWRRVLTFSQPPTFPLQQEERAA 124690 Query: 303 QATGEFEVFVNGRLVHSKK 321 QATGEFEVFV+G+LVHSKK Sbjct: 124691 QATGEFEVFVDGKLVHSKK 124747 Score = 42.7 bits (99), Expect(2) = 5e-15 Identities = 18/26 (69%), Positives = 25/26 (96%) Frame = +3 Query: 321 KRGDGFVNESRLQKIVSVIDEEIKKR 346 ++GDGFV+E+RLQKI+S+I+EEI KR Sbjct: 124866 QKGDGFVDEARLQKIMSIIEEEISKR 124943 >gi|472266012|gb|KB718645.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03939, whole genome shotgun sequence Length = 201253 Score = 38.1 bits (87), Expect = 0.83 Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Frame = +3 Query: 174 SLKLIPSVSSEAGPAPGP--LPTRTPLAANSPGPTLDFTFRADPSAIGLADXXXXXXXXX 231 SL P+ SS GP PGP PTR P A GP + SA Sbjct: 129591 SLPRHPTSSSHTGPEPGPKAAPTRAPTA----GPQPSWRHTTSASAKSQESSQMVPQKPA 129758 Query: 232 XXLGTIPSAISLQNCTETFPSSSE 255 T P +SL CT + PSS + Sbjct: 129759 CQSSTRPEQLSLPPCTRSIPSSGK 129830 >gi|472264461|gb|KB720196.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05491, whole genome shotgun sequence Length = 59333 Score = 35.8 bits (81), Expect = 4.1 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Frame = +1 Query: 178 IPSVSSEAGPAPGPLPTRTPLA-ANSPGPTLDFTFRADPSAIGLA 221 I S+SS A P P PLP + LA A++PGP++ F A P+AI L+ Sbjct: 45613 ILSLSSLAAPLPLPLP*ASLLALASAPGPSIIFLLTAFPNAIELS 45747 >gi|472268816|gb|KB715841.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01135, whole genome shotgun sequence Length = 770973 Score = 34.7 bits (78), Expect = 9.2 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -3 Query: 179 PSVSSEAGPAPGPLPTRTPLAANSPGPT 206 P S GPAPGP PT P + SP P+ Sbjct: 67648 PRASGRRGPAPGPAPTAQPAGSCSPSPS 67565 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.316 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 676,912,070 Number of Sequences: 16710 Number of extensions: 8166041 Number of successful extensions: 75831 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1067 Number of HSP's successfully gapped in prelim test: 459 Number of HSP's that attempted gapping in prelim test: 66000 Number of HSP's gapped (non-prelim): 22833 length of query: 346 length of database: 1,052,295,386 effective HSP length: 133 effective length of query: 213 effective length of database: 1,050,072,956 effective search space: 223665539628 effective search space used: 223665539628 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 78 (34.7 bits)