TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human
(Homo sapiens)
         (346 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11...    63   5e-15
gi|472266012|gb|KB718645.1| Leptonychotes weddellii isolate WS11...    38   0.83 
gi|472264461|gb|KB720196.1| Leptonychotes weddellii isolate WS11...    36   4.1  
gi|472268816|gb|KB715841.1| Leptonychotes weddellii isolate WS11...    35   9.2  

>gi|472268302|gb|KB716355.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01649, whole genome
              shotgun sequence
          Length = 595937

 Score = 62.8 bits (151), Expect(2) = 5e-15
 Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 33/79 (41%)
 Frame = +2

Query: 276    SLRYILLKKSLEQQFPNHLLF---------------------------------EEDRAA 302
              +L++ILL+KSLEQQFPN LLF                                 +E+RAA
Sbjct: 124511 TLQFILLRKSLEQQFPNRLLFVSGLGEVAGQGSETPGAWRRVLTFSQPPTFPLQQEERAA 124690

Query: 303    QATGEFEVFVNGRLVHSKK 321
              QATGEFEVFV+G+LVHSKK
Sbjct: 124691 QATGEFEVFVDGKLVHSKK 124747



 Score = 42.7 bits (99), Expect(2) = 5e-15
 Identities = 18/26 (69%), Positives = 25/26 (96%)
 Frame = +3

Query: 321    KRGDGFVNESRLQKIVSVIDEEIKKR 346
              ++GDGFV+E+RLQKI+S+I+EEI KR
Sbjct: 124866 QKGDGFVDEARLQKIMSIIEEEISKR 124943


>gi|472266012|gb|KB718645.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold03939, whole genome
              shotgun sequence
          Length = 201253

 Score = 38.1 bits (87), Expect = 0.83
 Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 174    SLKLIPSVSSEAGPAPGP--LPTRTPLAANSPGPTLDFTFRADPSAIGLADXXXXXXXXX 231
              SL   P+ SS  GP PGP   PTR P A    GP   +      SA              
Sbjct: 129591 SLPRHPTSSSHTGPEPGPKAAPTRAPTA----GPQPSWRHTTSASAKSQESSQMVPQKPA 129758

Query: 232    XXLGTIPSAISLQNCTETFPSSSE 255
                  T P  +SL  CT + PSS +
Sbjct: 129759 CQSSTRPEQLSLPPCTRSIPSSGK 129830


>gi|472264461|gb|KB720196.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold05491, whole genome
             shotgun sequence
          Length = 59333

 Score = 35.8 bits (81), Expect = 4.1
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +1

Query: 178   IPSVSSEAGPAPGPLPTRTPLA-ANSPGPTLDFTFRADPSAIGLA 221
             I S+SS A P P PLP  + LA A++PGP++ F   A P+AI L+
Sbjct: 45613 ILSLSSLAAPLPLPLP*ASLLALASAPGPSIIFLLTAFPNAIELS 45747


>gi|472268816|gb|KB715841.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold01135, whole genome
             shotgun sequence
          Length = 770973

 Score = 34.7 bits (78), Expect = 9.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 179   PSVSSEAGPAPGPLPTRTPLAANSPGPT 206
             P  S   GPAPGP PT  P  + SP P+
Sbjct: 67648 PRASGRRGPAPGPAPTAQPAGSCSPSPS 67565


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 676,912,070
Number of Sequences: 16710
Number of extensions: 8166041
Number of successful extensions: 75831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 66000
Number of HSP's gapped (non-prelim): 22833
length of query: 346
length of database: 1,052,295,386
effective HSP length: 133
effective length of query: 213
effective length of database: 1,050,072,956
effective search space: 223665539628
effective search space used: 223665539628
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)