TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000117_2.0 # Protein # Selenoprotein U3 (SelU3) # Human
(Homo sapiens)
         (231 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269622|gb|KB715067.1| Leptonychotes weddellii isolate WS11...   131   3e-29
gi|472267120|gb|KB717537.1| Leptonychotes weddellii isolate WS11...    33   9.9  
gi|472269375|gb|KB715314.1| Leptonychotes weddellii isolate WS11...    33   9.9  

>gi|472269622|gb|KB715067.1| Leptonychotes weddellii isolate WS11-02
            unplaced genomic scaffold scaffold00361, whole genome
            shotgun sequence
          Length = 1391149

 Score =  131 bits (330), Expect = 3e-29
 Identities = 63/69 (91%), Positives = 64/69 (92%)
 Frame = -2

Query: 51   EAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQE 110
            +AVELRSLWRE ACVVAGLRRFGC VCRWIA DLSSL GLLDQHGVRLVGVGPEALGLQE
Sbjct: 5067 QAVELRSLWREQACVVAGLRRFGCSVCRWIAPDLSSLRGLLDQHGVRLVGVGPEALGLQE 4888

Query: 111  FLDGDYFAG 119
            FLDG YFAG
Sbjct: 4887 FLDGGYFAG 4861



 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 29/47 (61%), Positives = 32/47 (68%), Gaps = 7/47 (14%)
 Frame = -2

Query: 137  RLWTQA---SPEFGQATW----CLRRYNSLSILPAALGKPVRDVAAK 176
            R+W QA     + G   W    CLRRYNSLSI+PAALGKPVRDVA K
Sbjct: 3780 RVWGQALGPGLQRGARAWTSQLCLRRYNSLSIVPAALGKPVRDVALK 3640



 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = -2

Query: 202  EVPRRLRPQGAHPAGPGHLCGGLCQ 226
            EVPRRL   G HPAGPGHLCGGLCQ
Sbjct: 3186 EVPRRLCFPGEHPAGPGHLCGGLCQ 3112



 Score = 36.2 bits (82), Expect = 1.5
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 120  ELYLDESKQLYKELGFKR 137
            ELYLDESKQ Y+ELGF+R
Sbjct: 4276 ELYLDESKQFYRELGFRR 4223


>gi|472267120|gb|KB717537.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02831, whole genome
              shotgun sequence
          Length = 320416

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -2

Query: 45     KHAVTGEAVELRSL----WREHACVVAGLRRFGCVVCR-WIAQDLSSLAGLLDQHGVRLV 99
              KH ++G    LRS+       H  +  G   FGC V R WI   LS  AG+L  HG R  
Sbjct: 163989 KH*LSGIPFSLRSIPFSGMMSHFLLKPG--HFGCYVMRIWILFKLSVSAGVL*HHGCRRS 163816

Query: 100    GVGPEAL 106
              G G  +L
Sbjct: 163815 GSGASSL 163795


>gi|472269375|gb|KB715314.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold00608, whole genome
             shotgun sequence
          Length = 1077585

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = -3

Query: 81    AQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFAGELYLDESKQL 129
             A DLSSL   LD+ GV L  V  E +  +      YF GE++LDE   L
Sbjct: 85957 AADLSSLKPKLDELGVPLYAVVKEQIRTEVQDFQPYFKGEIFLDEKVHL 85811


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.320    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 922,828,135
Number of Sequences: 16710
Number of extensions: 14009311
Number of successful extensions: 79571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 551
Number of HSP's that attempted gapping in prelim test: 72123
Number of HSP's gapped (non-prelim): 21209
length of query: 231
length of database: 1,052,295,386
effective HSP length: 128
effective length of query: 103
effective length of database: 1,050,156,506
effective search space: 108166120118
effective search space used: 108166120118
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)