Command line: [exonerate -m p2g --showtargetgff -q ./SelU2.fa -t SelU2.carpeta/genomic.fa]
Hostname: [ws116037]

C4 Alignment:
------------
         Query: SPP00000114_2.0 # Protein # Selenoprotein U2 (SelU2) # Human (Homo sapiens)
        Target: gi|472268960|gb|KB715697.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00991, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1036
   Query range: 2 -> 226
  Target range: 386508 -> 377691

      3 : AlaProAlaProValThrArgGlnValSerGlyAlaAlaAlaLeuValProAlaProS :     22
          |||! !|||||||||||||||||||||||||||::!||||||! !!.! !!!.!||||
          AlaLeuAlaProValThrArgGlnValSerGlySerAlaAlaProAlaAlaValProS
 386508 : GCCCTCGCCCCGGTTACGCGGCAGGTCAGCGGCAGCGCCGCCCCAGCCGCAGTCCCGA : 386451

     23 : erGlyProAspSerGlyGlnProLeuAlaAlaAlaValAlaGluLeuProValLeuAs :     41
          ||||||||!!: !!||||||||||||||||||||||||||||||||||||||||||||
          erGlyProGluArgGlyGlnProLeuAlaAlaAlaValAlaGluLeuProValLeuAs
 386450 : GCGGCCCCGAGCGCGGGCAGCCCCTGGCCGCAGCGGTAGCCGAGCTGCCCGTGCTGGA : 386394

     42 : pAlaArgGlyGlnArgValProPheGlyAlaLeuPheArgGluArgArgAlaValVal :     60
          ||||  !|||::!!:!||||||||||||||||||||||||||||||||||||||||||
          pAlaSerGlyArgGlnValProPheGlyAlaLeuPheArgGluArgArgAlaValVal
 386393 : CGCCTCCGGGAGGCAGGTGCCGTTCGGCGCGCTGTTTCGGGAGCGTCGGGCCGTCGTA : 386337

     61 : ValPheValArg  >>>> Target Intron 1 >>>>  HisPheLeuCysTyrIl :     70
          ||||||||||||            435 bp           |||||||||||||||||
          ValPheValArg++                         ++HisPheLeuCysTyrIl
 386336 : GTCTTCGTGCGGgt.........................agCATTTCCTGTGTTACAT : 385872

     71 : eCysLysGluTyrValGluAspLeuAlaLysIleProArgSerPheLeuGln  >>>> :     88
          |||||||||||||||||||||||||||||||||||||!:!||||||||||||      
          eCysLysGluTyrValGluAspLeuAlaLysIleProLysSerPheLeuGln++    
 385871 : TTGCAAGGAATACGTAGAAGATCTGGCCAAAATCCCCAAGAGTTTTTTACAAgt.... : 385816

     89 :  Target Intron 2 >>>>  GluAlaAsnValThrLeuIleValIleGlyGlnSe :     99
                889 bp           ||||||:!!||||||||||||||||||||||||||
                               ++GluAlaAspValThrLeuIleValIleGlyGlnSe
 385815 : .....................agGAAGCAGATGTCACCCTAATAGTGATTGGACAGTC : 384896

    100 : rSerTyrHisHisIleGlu  >>>> Target Intron 3 >>>>  ProPheCysL :    109
          |||||||||||||||||||            160 bp           ||||||||||
          rSerTyrHisHisIleGlu++                         ++ProPheCysL
 384895 : ATCCTACCATCATATCGAGgt.........................agCCTTTCTGCA : 384706

    110 : ysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysAr :    128
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||!:
          ysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysLy
 384705 : AACTGACTGGGTATTCTCATGAAATCTATGTTGATCCTGAGAGAGAAATTTATAAAAA : 384649

    129 : gLeuGlyMetLysArgGlyGluGluIleAlaSerSer{G}  >>>> Target Intr :    141
          !||||||||||||||||||||||||||||||:!!|||{|}           4160 bp
          sLeuGlyMetLysArgGlyGluGluIleAlaAlaSer{G}++                
 384648 : ATTGGGAATGAAAAGAGGTGAAGAAATTGCCGCCTCA{G}gt................ : 384607

    142 : on 4 >>>>  {ly}GlnSerProHisIleLysSerAsnLeuLeuSerGlySerLeuG :    156
                     {||}:!!|||||||||||||||||||||:!!||||||||||||:!!!
                   ++{ly}LysSerProHisIleLysSerAsnIleLeuSerGlySerIleA
 384606 : .........ag{GA}AAGAGCCCCCATATAAAATCAAATATACTCTCAGGAAGCATTC : 380405

    157 : lnSerLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGl :    175
          :!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgSerLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGl
 380404 : GGAGCCTGTGGAGGGCAGTGACTGGCCCTCTTTTTGATTTTCAAGGAGACCCTGCTCA : 380348

    176 : nGlnGlyGlyThrLeuIleLeuGlyPro{G}  >>>> Target Intron 5 >>>> :    185
          ||||||||||||||||||||||||||||{|}           2501 bp         
          nGlnGlyGlyThrLeuIleLeuGlyPro{G}++                         
 380347 : GCAAGGCGGAACCCTCATCTTAGGTCCA{G}gt......................... : 380315

    186 :   {ly}AsnAsnIleHisPheIleHisArgAspArgAsnArgLeuAspHisLysProI :    203
            {||}|||||||||||||||||||||||||||!:!||||||||||||||||||||||
          ++{ly}AsnAsnIleHisPheIleHisArgAspLysAsnArgLeuAspHisLysProI
 380314 : ag{GT}AACAACATCCATTTTATACACCGTGATAAAAATAGGTTGGATCACAAACCCA : 377763

    204 : leAsnSerValLeuGlnLeuValGlyValGlnHisValAsnPheThrAsnArgProSe :    222
          ||||||||||||||||||||||||||||||||||||||:!!||||||!:!||||||||
          leAsnSerValLeuGlnLeuValGlyValGlnHisValAspPheThrSerArgProSe
 377762 : TCAACTCTGTTTTACAGCTTGTAGGAGTTCAGCACGTGGACTTTACAAGCAGACCTTC : 377706

    223 : rValIleHisVal :    226
          |||||||||||||
          rValIleHisVal
 377705 : AGTTATCCATGTG : 377692

vulgar: SPP00000114_2.0 2 226 . gi|472268960|gb|KB715697.1| 386508 377691 - 1036 M 62 186 5 0 2 I 0 431 3 0 2 M 23 69 5 0 2 I 0 885 3 0 2 M 18 54 5 0 2 I 0 156 3 0 2 M 35 105 S 0 1 5 0 2 I 0 4156 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 2497 3 0 2 S 1 2 M 41 123
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	gene	377692	386508	1036	-	.	gene_id 1 ; sequence SPP00000114_2.0 ; gene_orientation +
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	386323	386508	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	386323	386508	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice5	386321	386322	.	-	.	intron_id 1 ; splice_site "GT"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	intron	385888	386322	.	-	.	intron_id 1
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice3	385888	385889	.	-	.	intron_id 0 ; splice_site "AG"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	385819	385887	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	385819	385887	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice5	385817	385818	.	-	.	intron_id 2 ; splice_site "GT"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	intron	384930	385818	.	-	.	intron_id 2
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice3	384930	384931	.	-	.	intron_id 1 ; splice_site "AG"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	384876	384929	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	384876	384929	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice5	384874	384875	.	-	.	intron_id 3 ; splice_site "GT"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	intron	384716	384875	.	-	.	intron_id 3
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice3	384716	384717	.	-	.	intron_id 2 ; splice_site "AG"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	384610	384715	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	384610	384715	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice5	384608	384609	.	-	.	intron_id 4 ; splice_site "GT"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	intron	380450	384609	.	-	.	intron_id 4
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice3	380450	380451	.	-	.	intron_id 3 ; splice_site "AG"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	380318	380449	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	380318	380449	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice5	380316	380317	.	-	.	intron_id 5 ; splice_site "GT"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	intron	377817	380317	.	-	.	intron_id 5
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	splice3	377817	377818	.	-	.	intron_id 4 ; splice_site "AG"
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	cds	377692	377816	.	-	.	
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	exon	377692	377816	.	-	.	insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1|	exonerate:protein2genome:local	similarity	377692	386508	1036	-	.	alignment_id 1 ; Query SPP00000114_2.0 ; Align 386509 3 186 ; Align 385888 65 69 ; Align 384930 88 54 ; Align 384716 106 105 ; Align 380448 142 129 ; Align 377815 186 123
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis