Command line: [exonerate -m p2g --showtargetgff -q ./SelU2.fa -t SelU2.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000114_2.0 # Protein # Selenoprotein U2 (SelU2) # Human (Homo sapiens)
Target: gi|472268960|gb|KB715697.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00991, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1036
Query range: 2 -> 226
Target range: 386508 -> 377691
3 : AlaProAlaProValThrArgGlnValSerGlyAlaAlaAlaLeuValProAlaProS : 22
|||! !|||||||||||||||||||||||||||::!||||||! !!.! !!!.!||||
AlaLeuAlaProValThrArgGlnValSerGlySerAlaAlaProAlaAlaValProS
386508 : GCCCTCGCCCCGGTTACGCGGCAGGTCAGCGGCAGCGCCGCCCCAGCCGCAGTCCCGA : 386451
23 : erGlyProAspSerGlyGlnProLeuAlaAlaAlaValAlaGluLeuProValLeuAs : 41
||||||||!!: !!||||||||||||||||||||||||||||||||||||||||||||
erGlyProGluArgGlyGlnProLeuAlaAlaAlaValAlaGluLeuProValLeuAs
386450 : GCGGCCCCGAGCGCGGGCAGCCCCTGGCCGCAGCGGTAGCCGAGCTGCCCGTGCTGGA : 386394
42 : pAlaArgGlyGlnArgValProPheGlyAlaLeuPheArgGluArgArgAlaValVal : 60
|||| !|||::!!:!||||||||||||||||||||||||||||||||||||||||||
pAlaSerGlyArgGlnValProPheGlyAlaLeuPheArgGluArgArgAlaValVal
386393 : CGCCTCCGGGAGGCAGGTGCCGTTCGGCGCGCTGTTTCGGGAGCGTCGGGCCGTCGTA : 386337
61 : ValPheValArg >>>> Target Intron 1 >>>> HisPheLeuCysTyrIl : 70
|||||||||||| 435 bp |||||||||||||||||
ValPheValArg++ ++HisPheLeuCysTyrIl
386336 : GTCTTCGTGCGGgt.........................agCATTTCCTGTGTTACAT : 385872
71 : eCysLysGluTyrValGluAspLeuAlaLysIleProArgSerPheLeuGln >>>> : 88
|||||||||||||||||||||||||||||||||||||!:!||||||||||||
eCysLysGluTyrValGluAspLeuAlaLysIleProLysSerPheLeuGln++
385871 : TTGCAAGGAATACGTAGAAGATCTGGCCAAAATCCCCAAGAGTTTTTTACAAgt.... : 385816
89 : Target Intron 2 >>>> GluAlaAsnValThrLeuIleValIleGlyGlnSe : 99
889 bp ||||||:!!||||||||||||||||||||||||||
++GluAlaAspValThrLeuIleValIleGlyGlnSe
385815 : .....................agGAAGCAGATGTCACCCTAATAGTGATTGGACAGTC : 384896
100 : rSerTyrHisHisIleGlu >>>> Target Intron 3 >>>> ProPheCysL : 109
||||||||||||||||||| 160 bp ||||||||||
rSerTyrHisHisIleGlu++ ++ProPheCysL
384895 : ATCCTACCATCATATCGAGgt.........................agCCTTTCTGCA : 384706
110 : ysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysAr : 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||!:
ysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysLy
384705 : AACTGACTGGGTATTCTCATGAAATCTATGTTGATCCTGAGAGAGAAATTTATAAAAA : 384649
129 : gLeuGlyMetLysArgGlyGluGluIleAlaSerSer{G} >>>> Target Intr : 141
!||||||||||||||||||||||||||||||:!!|||{|} 4160 bp
sLeuGlyMetLysArgGlyGluGluIleAlaAlaSer{G}++
384648 : ATTGGGAATGAAAAGAGGTGAAGAAATTGCCGCCTCA{G}gt................ : 384607
142 : on 4 >>>> {ly}GlnSerProHisIleLysSerAsnLeuLeuSerGlySerLeuG : 156
{||}:!!|||||||||||||||||||||:!!||||||||||||:!!!
++{ly}LysSerProHisIleLysSerAsnIleLeuSerGlySerIleA
384606 : .........ag{GA}AAGAGCCCCCATATAAAATCAAATATACTCTCAGGAAGCATTC : 380405
157 : lnSerLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGl : 175
:!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rgSerLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGl
380404 : GGAGCCTGTGGAGGGCAGTGACTGGCCCTCTTTTTGATTTTCAAGGAGACCCTGCTCA : 380348
176 : nGlnGlyGlyThrLeuIleLeuGlyPro{G} >>>> Target Intron 5 >>>> : 185
||||||||||||||||||||||||||||{|} 2501 bp
nGlnGlyGlyThrLeuIleLeuGlyPro{G}++
380347 : GCAAGGCGGAACCCTCATCTTAGGTCCA{G}gt......................... : 380315
186 : {ly}AsnAsnIleHisPheIleHisArgAspArgAsnArgLeuAspHisLysProI : 203
{||}|||||||||||||||||||||||||||!:!||||||||||||||||||||||
++{ly}AsnAsnIleHisPheIleHisArgAspLysAsnArgLeuAspHisLysProI
380314 : ag{GT}AACAACATCCATTTTATACACCGTGATAAAAATAGGTTGGATCACAAACCCA : 377763
204 : leAsnSerValLeuGlnLeuValGlyValGlnHisValAsnPheThrAsnArgProSe : 222
||||||||||||||||||||||||||||||||||||||:!!||||||!:!||||||||
leAsnSerValLeuGlnLeuValGlyValGlnHisValAspPheThrSerArgProSe
377762 : TCAACTCTGTTTTACAGCTTGTAGGAGTTCAGCACGTGGACTTTACAAGCAGACCTTC : 377706
223 : rValIleHisVal : 226
|||||||||||||
rValIleHisVal
377705 : AGTTATCCATGTG : 377692
vulgar: SPP00000114_2.0 2 226 . gi|472268960|gb|KB715697.1| 386508 377691 - 1036 M 62 186 5 0 2 I 0 431 3 0 2 M 23 69 5 0 2 I 0 885 3 0 2 M 18 54 5 0 2 I 0 156 3 0 2 M 35 105 S 0 1 5 0 2 I 0 4156 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 2497 3 0 2 S 1 2 M 41 123
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local gene 377692 386508 1036 - . gene_id 1 ; sequence SPP00000114_2.0 ; gene_orientation +
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 386323 386508 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 386323 386508 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice5 386321 386322 . - . intron_id 1 ; splice_site "GT"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local intron 385888 386322 . - . intron_id 1
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice3 385888 385889 . - . intron_id 0 ; splice_site "AG"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 385819 385887 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 385819 385887 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice5 385817 385818 . - . intron_id 2 ; splice_site "GT"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local intron 384930 385818 . - . intron_id 2
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice3 384930 384931 . - . intron_id 1 ; splice_site "AG"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 384876 384929 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 384876 384929 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice5 384874 384875 . - . intron_id 3 ; splice_site "GT"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local intron 384716 384875 . - . intron_id 3
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice3 384716 384717 . - . intron_id 2 ; splice_site "AG"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 384610 384715 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 384610 384715 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice5 384608 384609 . - . intron_id 4 ; splice_site "GT"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local intron 380450 384609 . - . intron_id 4
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice3 380450 380451 . - . intron_id 3 ; splice_site "AG"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 380318 380449 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 380318 380449 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice5 380316 380317 . - . intron_id 5 ; splice_site "GT"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local intron 377817 380317 . - . intron_id 5
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local splice3 377817 377818 . - . intron_id 4 ; splice_site "AG"
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local cds 377692 377816 . - .
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local exon 377692 377816 . - . insertions 0 ; deletions 0
gi|472268960|gb|KB715697.1| exonerate:protein2genome:local similarity 377692 386508 1036 - . alignment_id 1 ; Query SPP00000114_2.0 ; Align 386509 3 186 ; Align 385888 65 69 ; Align 384930 88 54 ; Align 384716 106 105 ; Align 380448 142 129 ; Align 377815 186 123
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis