TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_2.0 # Protein # Selenoprotein U2 (SelU2) # Human
(Homo sapiens)
         (226 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472268960|gb|KB715697.1| Leptonychotes weddellii isolate WS11...    93   1e-17
gi|472268488|gb|KB716169.1| Leptonychotes weddellii isolate WS11...    33   9.5  

>gi|472268960|gb|KB715697.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00991, whole genome
              shotgun sequence
          Length = 1075223

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 42/46 (91%), Positives = 46/46 (100%)
 Frame = -1

Query: 140    SGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPG 185
              SG+SPHIKSN+LSGS++SLWRAVTGPLFDFQGDPAQQGGTLILGPG
Sbjct: 380453 SGKSPHIKSNILSGSIRSLWRAVTGPLFDFQGDPAQQGGTLILGPG 380316



 Score = 86.7 bits (213), Expect = 9e-16
 Identities = 39/42 (92%), Positives = 42/42 (100%)
 Frame = -3

Query: 185    GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV 226
              GNNIHFIHRD+NRLDHKPINSVLQLVGVQHV+FT+RPSVIHV
Sbjct: 377817 GNNIHFIHRDKNRLDHKPINSVLQLVGVQHVDFTSRPSVIHV 377692



 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = -2

Query: 106    PFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPHIKSNLLSGS 154
              PFCKLTGYSHEIYVDPEREIYK+LGMKRGEEIA+SG++ H+ S   +G+
Sbjct: 384715 PFCKLTGYSHEIYVDPEREIYKKLGMKRGEEIAASGKT*HVSSENANGA 384569



 Score = 47.0 bits (110), Expect = 8e-04
 Identities = 25/50 (50%), Positives = 29/50 (58%)
 Frame = -3

Query: 3      APAPVTRQVSGAAALVPAPSGPDSGQXXXXXXXXXXXXXXRGQRVPFGAL 52
              A APVTRQVSG+AA    PSGP+ GQ               G++VPFGAL
Sbjct: 386508 ALAPVTRQVSGSAAPAAVPSGPERGQPLAAAVAELPVLDASGRQVPFGAL 386359



 Score = 47.0 bits (110), Expect = 8e-04
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -3

Query: 67     LCYICKEYVEDLAKIPRSFLQ 87
              LCYICKEYVEDLAKIP+SFLQ
Sbjct: 385881 LCYICKEYVEDLAKIPKSFLQ 385819



 Score = 40.4 bits (93), Expect = 0.078
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 82     PRSFLQEANVTLIVIGQSSYHHIE 105
              P   L+EA+VTLIVIGQSSYHHIE
Sbjct: 384947 PFFLLKEADVTLIVIGQSSYHHIE 384876


>gi|472268488|gb|KB716169.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01463, whole genome
              shotgun sequence
          Length = 625042

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 105    EPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQSPH---IKSNLLSGSLQSLWRA 161
              E FC+L G+        E     R     G+E+  SG+  +     ++ L  +  ++W+ 
Sbjct: 417633 EGFCRLQGFG-------EARCLGRGAATVGQEVGGSGRGTYPSCCPNSRLQKAEHAVWQN 417791

Query: 162    VTGPLFDFQGDPAQQGGTLILGPGNNIH 189
               +GPL  + G PA   GTL  G     H
Sbjct: 417792 SSGPLRCWAGAPAGDRGTLPAGASRLAH 417875


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,025,086
Number of Sequences: 16710
Number of extensions: 11451994
Number of successful extensions: 44851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 341
Number of HSP's that attempted gapping in prelim test: 42292
Number of HSP's gapped (non-prelim): 7918
length of query: 226
length of database: 1,052,295,386
effective HSP length: 127
effective length of query: 99
effective length of database: 1,050,173,216
effective search space: 103967148384
effective search space used: 103967148384
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)