Command line: [exonerate -m p2g --showtargetgff -q ./SelU1.fa -t SelU1.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000109_2.0 # Protein # Selenoprotein U1 (SelU1) # Human (Homo sapiens)
Target: gi|472269375|gb|KB715314.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00608, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 636
Query range: 89 -> 229
Target range: 85963 -> 82097
90 : GluGluAlaAlaAspLeuSerSerLeuLysSerMetLeuAspGlnLeuGlyValProLeu : 109
:!!||||||||||||||||||||||||||| !!! !||||||:!!|||||||||||||||
GlnGluAlaAlaAspLeuSerSerLeuLysProLysLeuAspGluLeuGlyValProLeu
85963 : CAGGAAGCTGCGGACCTGTCTTCCCTGAAGCCCAAGCTGGATGAACTGGGAGTCCCCCTG : 85906
110 : TyrAlaValValLysGluHisIleArgThrGluValLysAspPheGlnProTyrPheLys : 129
||||||||||||||||||!!.|||||||||||||||:!!|||||||||||||||||||||
TyrAlaValValLysGluGlnIleArgThrGluValGlnAspPheGlnProTyrPheLys
85905 : TATGCAGTGGTGAAGGAACAAATCAGGACCGAAGTGCAGGACTTCCAGCCTTATTTCAAA : 85846
130 : GlyGluIlePheLeuAspGluLys >>>> Target Intron 1 >>>> LysLysP : 140
|||||||||||||||||||||||| 675 bp |||||||
GlyGluIlePheLeuAspGluLys++ ++LysLysP
85845 : GGAGAAATCTTCCTGGATGAAAAGgt.........................agAAAAAGT : 85138
141 : heTyrGlyProGlnArgArgLysMetMetPheMetGlyPheIleArgLeuGlyValTrpT : 160
|||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||||
heTyrGlyProGlnArgArgLysMetMetPheMetGlyPheValArgLeuGlyValTrpT
85137 : TCTACGGTCCCCAAAGACGGAAGATGATGTTTATGGGATTTGTCCGTCTGGGTGTCTGGT : 85078
161 : yrAsnPhePheArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheI : 180
||||||||||||||||| !!||||||||||||||||||||||||||||||||||||||||
yrAsnPhePheArgAlaArgAsnGlyGlyPheSerGlyAsnLeuGluGlyGluGlyPheI
85077 : ACAACTTCTTCCGAGCCCGGAACGGAGGCTTTTCTGGAAATCTGGAAGGCGAAGGCTTCA : 85018
181 : leLeuGlyGlyValPheValValGlySerGlyLysGln >>>> Target Intron 2 : 193
|||||||||||||||||||||||||||||||||||||| 2771 bp
leLeuGlyGlyValPheValValGlySerGlyLysGln++
85017 : TCCTTGGGGGAGTTTTTGTGGTGGGATCAGGAAAGCAGgt.................... : 84977
194 : >>>> GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLe : 210
||||||||||||||||||||||||||||||||||||||||||||||||! !:!
++GlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnProVa
84976 : .....agGGCATTCTTCTCGAGCATCGAGAAAAAGAATTTGGAGACAAAGTGAACCCAGT : 82157
211 : uSerValLeuGluAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys : 229
!|||||||||||||||!.!!:!! !|||:!!|||||||||||||||:!!||| !|||
lSerValLeuGluAlaValArgLysIleGlnProGlnThrLeuAlaAlaGluAlaLys
82156 : TTCAGTTCTGGAAGCTGTTAGGAAGATCCAACCCCAGACTTTGGCTGCGGAGGCAAAG : 82098
vulgar: SPP00000109_2.0 89 229 . gi|472269375|gb|KB715314.1| 85963 82097 - 636 M 48 144 5 0 2 I 0 671 3 0 2 M 55 165 5 0 2 I 0 2767 3 0 2 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local gene 82098 85963 636 - . gene_id 1 ; sequence SPP00000109_2.0 ; gene_orientation +
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local cds 85820 85963 . - .
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local exon 85820 85963 . - . insertions 0 ; deletions 0
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local splice5 85818 85819 . - . intron_id 1 ; splice_site "GT"
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local intron 85145 85819 . - . intron_id 1
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local splice3 85145 85146 . - . intron_id 0 ; splice_site "AG"
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local cds 84980 85144 . - .
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local exon 84980 85144 . - . insertions 0 ; deletions 0
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local splice5 84978 84979 . - . intron_id 2 ; splice_site "GT"
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local intron 82209 84979 . - . intron_id 2
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local splice3 82209 82210 . - . intron_id 1 ; splice_site "AG"
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local cds 82098 82208 . - .
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local exon 82098 82208 . - . insertions 0 ; deletions 0
gi|472269375|gb|KB715314.1| exonerate:protein2genome:local similarity 82098 85963 636 - . alignment_id 1 ; Query SPP00000109_2.0 ; Align 85964 90 144 ; Align 85145 138 165 ; Align 82209 193 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis