TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000109_2.0 # Protein # Selenoprotein U1 (SelU1) # Human
(Homo sapiens)
         (229 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269375|gb|KB715314.1| Leptonychotes weddellii isolate WS11...   117   5e-25
gi|472267900|gb|KB716757.1| Leptonychotes weddellii isolate WS11...    76   1e-12
gi|472269622|gb|KB715067.1| Leptonychotes weddellii isolate WS11...    47   7e-04

>gi|472269375|gb|KB715314.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold00608, whole genome
             shotgun sequence
          Length = 1077585

 Score =  117 bits (293), Expect = 5e-25
 Identities = 55/60 (91%), Positives = 57/60 (95%)
 Frame = -3

Query: 133   FLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ 192
             FL  +KKFYGPQRRKMMFMGF+RLGVWYNFFRA NGGFSGNLEGEGFILGGVFVVGSGKQ
Sbjct: 85159 FLLLQKKFYGPQRRKMMFMGFVRLGVWYNFFRARNGGFSGNLEGEGFILGGVFVVGSGKQ 84980



 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = -3

Query: 90    EEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK 137
             +EAADLSSLK  LD+LGVPLYAVVKE IRTEV+DFQPYFKGEIFLDEK
Sbjct: 85963 QEAADLSSLKPKLDELGVPLYAVVKEQIRTEVQDFQPYFKGEIFLDEK 85820



 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = -2

Query: 193   GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229
             GILLEHREKEFGDKVN +SVLEA + I+PQTLA+E K
Sbjct: 82208 GILLEHREKEFGDKVNPVSVLEAVRKIQPQTLAAEAK 82098


>gi|472267900|gb|KB716757.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02051, whole genome
              shotgun sequence
          Length = 507105

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 40/59 (67%), Positives = 41/59 (69%)
 Frame = -3

Query: 1      MSFLQDPSFFTMGMWSIXXXXXXXXXXXXXXXNTDVFLSKPQKAALEYLEDIDLKTLEK 59
              MSFLQD SFF+MGMWSI               NTDVFLSK QKA LEYLEDIDLKTLEK
Sbjct: 271321 MSFLQDLSFFSMGMWSIGMGALGAAALALLLANTDVFLSKSQKATLEYLEDIDLKTLEK 271145



 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 35/47 (74%), Positives = 36/47 (76%)
 Frame = -1

Query: 44     AALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRE 90
              A L + E I       EPRTFKAKELWEKNGAVIMAVRRPGCFLCRE
Sbjct: 269286 ARLGWEERILTCLFSPEPRTFKAKELWEKNGAVIMAVRRPGCFLCRE 269146


>gi|472269622|gb|KB715067.1| Leptonychotes weddellii isolate WS11-02
            unplaced genomic scaffold scaffold00361, whole genome
            shotgun sequence
          Length = 1391149

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = -2

Query: 67   KELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQP 126
            + LW +   V+  +RR GC +CR  A DLSSL+ +LDQ GV L  V  E +  +      
Sbjct: 5052 RSLWREQACVVAGLRRFGCSVCRWIAPDLSSLRGLLDQHGVRLVGVGPEALGLQEFLDGG 4873

Query: 127  YFKG 130
            YF G
Sbjct: 4872 YFAG 4861


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.322    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 774,727,465
Number of Sequences: 16710
Number of extensions: 11032920
Number of successful extensions: 33412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 31984
Number of HSP's gapped (non-prelim): 4512
length of query: 229
length of database: 1,052,295,386
effective HSP length: 127
effective length of query: 102
effective length of database: 1,050,173,216
effective search space: 107117668032
effective search space used: 107117668032
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)